BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	278631 =	206 (1.080)	30 (0.180)	15/140	NT	16.5%	intergenic (+226/+88)	USA300HOU_RS01215/gsiB	hypothetical protein/Glutathione‑binding protein GsiB
*	?	USA300TCH1516_ALE	278672 =	124 (0.750)	30 (0.180)	15/140	NT	16.5%	intergenic (+267/+47)	USA300HOU_RS01215/gsiB	hypothetical protein/Glutathione‑binding protein GsiB

Only 100 of 232 total aligned reads displayed.

TTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATACCTT  >  USA300TCH1516_ALE/278582‑278762

tttATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGtttt                                                                                            <  1:3219379/91‑1 (MQ=255)

tttATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGtttt                                                                                            >  1:1890977/1‑91 (MQ=255)

 ttATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGttttt                                                                                           >  2:232957/1‑91 (MQ=255)

  tATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTta                                                                                          <  2:1625134/91‑1 (MQ=255)

   aTTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTtat                                                                                         >  1:485892/1‑91 (MQ=255)

   aTTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTtat                                                                                         >  1:882519/1‑91 (MQ=255)

    ttGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTtata                                                                                        >  2:684937/1‑91 (MQ=255)

    ttGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTtata                                                                                        >  2:1964819/1‑91 (MQ=255)

    ttGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTtata                                                                                        <  1:2125179/91‑1 (MQ=255)

      gAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGt                                                                                      >  1:920414/1‑91 (MQ=255)

      gAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGt                                                                                      >  2:3651378/1‑91 (MQ=255)

       aaaTTCATCAAACAGAAATTAATACAATCATTTAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGtt                                                                                     >  2:3661535/1‑91 (MQ=255)

         aTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGa                                                                                   <  2:137884/91‑1 (MQ=255)

         aTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGa                                                                                   >  2:2847448/1‑91 (MQ=255)

           tcatcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAg                                                                                 <  2:774439/91‑1 (MQ=255)

            catcaAACAGAAATTAATACAATCATATAGGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGc                                                                                <  1:122600/91‑1 (MQ=255)

            catcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGc                                                                                >  1:227910/1‑91 (MQ=255)

            catcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACCTCGGCGTGGTTTTTATAGTTGAAGc                                                                                >  1:3614466/1‑91 (MQ=255)

             atcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCa                                                                               >  2:662875/1‑91 (MQ=255)

             atcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCa                                                                               <  2:3616484/91‑1 (MQ=255)

              tcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAg                                                                              <  1:88863/91‑1 (MQ=255)

              tcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAg                                                                              <  2:2508376/91‑1 (MQ=255)

               caAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAgg                                                                             >  2:3495603/1‑91 (MQ=255)

               caAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAgg                                                                             >  2:134593/1‑91 (MQ=255)

                 aaCAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGTAGGGc                                                                           >  2:3148816/1‑91 (MQ=255)

                 aaCAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGc                                                                           >  1:3147251/1‑91 (MQ=255)

                    aGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTga                                                                        <  2:1311563/91‑1 (MQ=255)

                    aGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTga                                                                        <  1:759939/91‑1 (MQ=255)

                      aaaTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTgaga                                                                      >  1:2844685/1‑91 (MQ=255)

                       aaTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGAc                                                                     >  2:1096134/1‑91 (MQ=255)

                       aaTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGCCGTGGTTTTTATAGTTGAAGCAGGGCTGAGAc                                                                     >  1:3292714/1‑91 (MQ=255)

                          tAATACAATCATATAAGCAAATTAAACCACGCCATAATTATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATa                                                                  <  2:1951733/91‑1 (MQ=255)

                          tAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATa                                                                  >  1:2822003/1‑91 (MQ=255)

                           aaTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaa                                                                 >  2:3005122/1‑91 (MQ=255)

                            aTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaaa                                                                <  2:666155/91‑1 (MQ=255)

                            aTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaaa                                                                <  1:2744472/91‑1 (MQ=255)

                            aTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaaa                                                                <  2:2388648/91‑1 (MQ=255)

                            aTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaaa                                                                <  2:258931/91‑1 (MQ=255)

                              aCAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATc                                                              <  1:3620182/91‑1 (MQ=255)

                               cAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCa                                                             >  1:1107749/1‑91 (MQ=255)

                                   tgcttcaactataaaaaccacgccgaagtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGt                                                         >  1:2852200‑M2/56‑91 (MQ=255)

                                    atatAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTc                                                        >  2:3669139/1‑91 (MQ=255)

                                     tataAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTcc                                                       <  1:2443668/91‑1 (MQ=255)

                                      ataAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTccc                                                      >  1:3261334/1‑91 (MQ=255)

                                         aGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcaca                                                   <  1:2366480/91‑1 (MQ=255)

                                          gCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCacac                                                  <  2:3871011/91‑1 (MQ=255)

                                          gCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCacac                                                  <  2:2221938/91‑1 (MQ=255)

                                           cAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTGCCACACt                                                 >  1:1936202/1‑91 (MQ=255)

                                             aaTTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTcc                                               <  1:259507/91‑1 (MQ=255)

                                              aTTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTccc                                              <  2:3052891/91‑1 (MQ=255)

                                               ttAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCt                                             <  2:2977651/91‑1 (MQ=255)

                                               ttAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCt                                             <  1:3493972/91‑1 (MQ=255)

                                               aaaaaccacgccgaagtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCt                                             >  1:1391510‑M2/44‑91 (MQ=255)

                                               aaaaaccacgccgaagtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCt                                             >  1:1391797‑M2/44‑91 (MQ=255)

                                                aaaaccacgccgaagtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCtt                                            >  1:2680455‑M2/43‑91 (MQ=255)

                                                  aaccacgccgaagtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTAt                                          >  2:449363‑M2/41‑91 (MQ=255)

                                                   ACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATc                                         <  1:1728898‑M1/91‑1 (MQ=255)

                                                    ccacgccgaagtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCg                                        >  1:1083721‑M2/39‑91 (MQ=255)

                                                    CCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCg                                        <  1:2082826‑M1/91‑1 (MQ=255)

                                                    CCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCg                                        <  2:1457539‑M1/91‑1 (MQ=255)

                                                    CCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCg                                        <  2:2602533‑M1/91‑1 (MQ=255)

                                                     cacgccgaagtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGt                                       >  1:3283986‑M2/38‑91 (MQ=255)

                                                     cacgccgaagtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGt                                       >  1:579483‑M2/38‑91 (MQ=255)

                                                      ACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGtt                                      >  1:1490632‑M1/1‑91 (MQ=255)

                                                       cgccgaagtcatccaatatgcttctggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCAGTTATCGCTc                                     >  2:1618204‑M2/36‑91 (MQ=255)

                                                        GCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCa                                    >  1:1393196‑M1/1‑91 (MQ=255)

                                                        GCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCa                                    >  2:882519‑M1/1‑91 (MQ=255)

                                                         ccgaagtcatccaatatgattatggcgtggtctTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTCATCGTTCaa                                   >  2:878325‑M2/34‑91 (MQ=255)

                                                         CCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCaa                                   >  2:3425240‑M1/1‑91 (MQ=255)

                                                         CCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCaa                                   >  1:684937‑M1/1‑91 (MQ=255)

                                                         CCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATAAATGTCCCACACTCCCTTATCGTTCaa                                   <  1:1391386‑M1/91‑1 (MQ=255)

                                                          CATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAAt                                  <  2:1266715‑M1/91‑1 (MQ=255)

                                                           aTAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATc                                 <  1:3556496/91‑1 (MQ=255)

                                                             agtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgt                               >  2:1851817‑M2/30‑91 (MQ=255)

                                                             aaTCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgt                               >  1:1302750/1‑91 (MQ=255)

                                                              aTCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgtt                              >  1:2756732/1‑91 (MQ=255)

                                                              aTCATATTGGATGACTTCGACGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgtt                              >  1:3682738/1‑91 (MQ=255)

                                                               tCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGTAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgttg                             <  2:3837625/91‑1 (MQ=255)

                                                                cATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgttgt                            <  1:1763455/91‑1 (MQ=255)

                                                                 atatTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgttgtt                           >  2:1108747/1‑91 (MQ=255)

                                                                  tccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTc                          >  1:1669802‑M2/25‑91 (MQ=255)

                                                                   ccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCg                         >  2:174299‑M2/24‑91 (MQ=255)

                                                                   atTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCg                         <  2:2302374/91‑1 (MQ=255)

                                                                    ttGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGa                        >  1:1995941/1‑91 (MQ=255)

                                                                       gATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATaa                     <  1:3745952/91‑1 (MQ=255)

                                                                         tGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATc                   <  2:1880355/91‑1 (MQ=255)

                                                                            cTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGAt                <  1:3036151/91‑1 (MQ=255)

                                                                            cTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGAt                <  1:988775/91‑1 (MQ=255)

                                                                              tCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTa              <  2:3350809/91‑1 (MQ=255)

                                                                               cGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTaa             >  1:2680638/1‑91 (MQ=255)

                                                                               cGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTaa             >  2:1020996/1‑91 (MQ=255)

                                                                                ggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTaaa            >  1:2398585‑M2/11‑91 (MQ=255)

                                                                                 gcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAAt           <  2:1288687‑M2/82‑1 (MQ=255)

                                                                                  cgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATa          <  1:788277‑M2/83‑1 (MQ=255)

                                                                                  cgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATa          <  1:536376‑M2/83‑1 (MQ=255)

                                                                                  cgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATa          <  1:536238‑M2/83‑1 (MQ=255)

                                                                                   gtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAg         <  1:3375094‑M2/84‑1 (MQ=255)

                                                                                      gtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATa      >  1:2170166‑M2/5‑91 (MQ=255)

                                                                                        ttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATAcc    <  2:2082826‑M2/89‑1 (MQ=255)

                                                                                          ttATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATACCtt  >  2:1583864/1‑91 (MQ=255)

TTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATACCTT  >  USA300TCH1516_ALE/278582‑278762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.