| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 365029 = | 140 (0.730) | 19 (0.120) | 13/136 | NT | 13.3% | intergenic (+39/+66) | nupC_1/sglT | Nucleoside permease NupC/Sodium/glucose cotransporter |
| ? | USA300TCH1516_ALE | 365083 = | 128 (0.790) | intergenic (+93/+12) | nupC_1/sglT | Nucleoside permease NupC/Sodium/glucose cotransporter | |||||
TCAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/365130‑365029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTT > USA300TCH1516_ALE/365083‑365172 TCAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGG > 2:423100/1‑91TCAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGG < 2:2511603/91‑1TCAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGG < 1:723806/91‑1TCAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGG > 2:2104191/1‑91 CAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGT > 2:2841386/1‑91 AACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTG < 2:1555935/91‑1 AACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTG < 2:13010/91‑1 AACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTG < 2:1555922/91‑1 AACATACATTACAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTG < 2:12337/91‑1 ACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGA > 2:1263103/1‑91 ACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGA > 2:1263554/1‑91 ACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGA > 2:3619865/1‑91 ACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGA > 2:1263775/1‑91 CATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGAC > 2:1271297/1‑91 CATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGAC > 2:3772187/1‑91 CATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGAC < 1:2825495/91‑1 CATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGAC < 1:3576327/91‑1 CATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGAC > 1:1974776/1‑91 ATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACG < 2:917779/91‑1 ATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACG > 2:2872139/1‑91 ATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACG < 1:3619865/91‑1 ATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCACTGTTGCGCCAACTTGGTGACG > 2:3127879/1‑91 TACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGG > 1:2021183/1‑91 TACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGG > 2:3637631/1‑91 ACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGG > 2:979378/1‑91 ACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGG > 2:3614415/1‑91 ACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGG > 2:2927774/1‑91 ACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGG > 1:3816489/1‑91 ACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGG < 1:3666673/91‑1 CATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGG > 2:3325153/1‑91 CATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGG > 2:2661750/1‑91 CATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGG > 2:3237755/1‑91 CATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGG > 2:3302318/1‑91 CATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGG < 2:379819/91‑1 CATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGG > 1:2868806/1‑91 ATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGT < 1:628378/91‑1 ATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGT < 1:698053/91‑1 ATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGT < 2:704704/91‑1 ATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGT < 1:1226410/91‑1 ATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGT < 2:600961/91‑1 TTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTT > 2:3728723/1‑91 TTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTT < 1:8673/91‑1 TTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTT > 2:475824/1‑91 TTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTT > 2:475902/1‑91 GTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTT > 2:101228/1‑91 GATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGT > 1:1452329/1‑91 TGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGC > 2:2642961/1‑91 TGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGC > 2:2643240/1‑91 TATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGT > 2:1979546/1‑91 ACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGGTTTTGAAATGTATGTTG > 1:322786/1‑91 CTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGA > 2:3169179/1‑91 TAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGAT > 2:1034471/1‑91 TAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGAT > 1:1587878/1‑91 AAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATG > 2:1015875/1‑91 AAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATG > 2:640222/1‑91 AAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATG > 1:3181450/1‑91 AAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATG > 1:3181484/1‑91 AGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGCAATGTATGTTGATGG > 1:1864573/1‑91 GTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGT > 1:1491475/1‑91 GTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGT > 1:3759464/1‑91 TATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTT < 1:101228/91‑1 ATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCT > 2:2801738/1‑91 GTTGCGCCAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAA > 2:1534531/1‑91 TGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCG < 2:2019843/91‑1 TGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCG > 2:1657641/1‑91 TGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCG < 1:1567996/91‑1 GACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGT < 1:1603351/91‑1 GACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGT < 1:2435200/91‑1 GACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGT < 1:2680236/91‑1 GACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGT > 2:1438594/1‑91 GACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGT < 1:504399/91‑1 ACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTT > 2:2892768/1‑91 ACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTT > 2:521273/1‑91 ACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTT < 2:1429781/91‑1 CGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTA < 2:2816283/91‑1 GGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTAT > 1:3768788/1‑91 GGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTAT < 2:710840/91‑1 GGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTAT > 1:1479070/1‑91 GGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTAT < 1:1015875/91‑1 GGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTAT > 1:2170578/1‑91 GGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATA > 1:2133963/1‑91 GGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATA < 1:2079992/91‑1 GGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCATTTAAAAAAATTGTTAATCCCGTTATA < 2:2399417/91‑1 GGTTTTATCATAGCAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATAT < 2:439767/91‑1 GGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATAT < 2:964513/91‑1 GGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATAT < 2:439709/91‑1 TTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTT < 2:2615387/91‑1 TTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTT < 1:3491697/91‑1 TTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAGATTGTTAATCCCGTTATATCTTT < 2:3509386/91‑1 TTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTT < 2:2190950/91‑1 TTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTT < 2:2192484/91‑1 TTATCATAACAATCTACTTTTTCGTAGCCGTCTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTT > 1:3451079/1‑91 TCAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/365130‑365029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTT > USA300TCH1516_ALE/365083‑365172 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |