| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 365029 = | 140 (0.730) | 19 (0.120) | 13/136 | NT | 13.3% | intergenic (+39/+66) | nupC_1/sglT | Nucleoside permease NupC/Sodium/glucose cotransporter |
| ? | USA300TCH1516_ALE | 365083 = | 128 (0.790) | intergenic (+93/+12) | nupC_1/sglT | Nucleoside permease NupC/Sodium/glucose cotransporter | |||||
Only 100 of 258 total aligned reads displayed.
AATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTT > USA300TCH1516_ALE/364994‑365173 | aTCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTAt > 2:1974776/1‑91 (MQ=255) aTCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTAt < 1:3353035/91‑1 (MQ=255) aTCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTAt > 1:417523/1‑91 (MQ=255) tCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc < 1:1604622/91‑1 (MQ=255) cGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCa > 2:1395951/1‑91 (MQ=255) gAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCAt > 1:964501/1‑91 (MQ=255) gTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAAc < 1:2023203/91‑1 (MQ=255) gctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACa > 2:2643240‑M1/28‑91 (MQ=255) ccTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAAt < 2:422319/91‑1 (MQ=255) cTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATc < 1:775064/91‑1 (MQ=255) taaattaaatTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCt < 2:1183520/91‑1 (MQ=255) aattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTAc < 1:881533/91‑1 (MQ=255) aattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTAc < 2:1512167/91‑1 (MQ=255) attaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACt < 1:1610682/91‑1 (MQ=255) ttaaattCATGGCAAAGCTAAACCCCGTCACCAAGCTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACtt > 1:2551345/1‑91 (MQ=255) aaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACtttt < 1:3562934/91‑1 (MQ=255) aattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACttttt > 1:3169664/1‑91 (MQ=255) aattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACttttt > 1:461660/1‑91 (MQ=255) tCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGt < 1:3198623/91‑1 (MQ=255) gattgttatgataaaaccccgtcactaagttatgatgcgctgttgcgccaacttggtgacggggtttTATCATAACAATCTACTTTTTCGt > 1:1452329‑M2/68‑91 (MQ=255) cATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTa > 2:3520318/1‑91 (MQ=255) aTGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAg < 2:2235398/91‑1 (MQ=255) aTGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAg < 1:3161132/91‑1 (MQ=255) cAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGt > 2:214317/1‑91 (MQ=255) cAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGt < 1:119134/91‑1 (MQ=255) cAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGt < 1:3523243/91‑1 (MQ=255) aGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGtttt < 2:2945586/91‑1 (MQ=255) cTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTg > 1:2992420/1‑91 (MQ=255) cTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTg < 2:3116837/91‑1 (MQ=255) tAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGa > 1:2791725/1‑91 (MQ=255) tAAACCCCGTCACCAAGTTGGCGCAACAGCGCAACATCACTTAGTGCCGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGa > 1:3093797/1‑91 (MQ=255) AAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGaa > 2:475824‑M1/1‑91 (MQ=255) AACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGaaa > 2:3728723‑M1/1‑91 (MQ=255) ACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAat < 2:600961‑M1/91‑1 (MQ=255) ACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAat < 1:628378‑M1/91‑1 (MQ=255) CCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatg > 2:2661750‑M1/1‑91 (MQ=255) CCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatg > 2:3325153‑M1/1‑91 (MQ=255) CCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgta > 2:3637631‑M1/1‑91 (MQ=255) CGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtat < 2:917779‑M1/91‑1 (MQ=255) CGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtat < 1:3619865‑M1/91‑1 (MQ=255) CGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtat > 2:2872139‑M1/1‑91 (MQ=255) GTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatg < 1:2825495‑M1/91‑1 (MQ=255) GTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatg > 2:3772187‑M1/1‑91 (MQ=255) TCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatgt > 2:1263775‑M1/1‑91 (MQ=255) TCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatgt > 2:1263103‑M1/1‑91 (MQ=255) actaagttatgatgcgctgttgcgccaacttggtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGGTTTTGAAATGTATGTTg > 1:322786‑M2/45‑91 (MQ=255) ACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTg > 2:2841386‑M1/1‑91 (MQ=255) CCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGa > 2:2104191‑M1/1‑91 (MQ=255) CCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGa < 2:2511603‑M1/91‑1 (MQ=255) cAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGAt > 2:3436368/1‑91 (MQ=255) aagttatgatgcgctgttgcgccaacttggtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATg > 2:1015875‑M2/42‑91 (MQ=255) aaGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATg < 1:2673085/91‑1 (MQ=255) agttatgatgcgctgttgcgccaacttggtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGCAATGTATGTTGATgg > 1:1864573‑M2/41‑91 (MQ=255) aGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg < 1:1351546/91‑1 (MQ=255) gttatgatgcgctgttgcgccaacttggtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGt > 1:1491475‑M2/40‑91 (MQ=255) gTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGt > 1:1831393/1‑91 (MQ=255) ttGGCGCAACAGGGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGtt < 2:3225683/91‑1 (MQ=255) ttGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGtt < 1:2263825/91‑1 (MQ=255) tatgatgcgctgttgcgccaacttggtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGttt < 1:101228‑M2/54‑1 (MQ=255) gcgcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTAt > 2:2630544/1‑91 (MQ=255) cgcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGttt > 2:1879768/1‑66 (MQ=255) gcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTaata > 1:2459114/1‑88 (MQ=255) gcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCt > 1:568391/1‑91 (MQ=255) atgcgctgttgcgccaacttggtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCt > 2:2801738‑M2/34‑91 (MQ=255) cAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCtt < 1:3755832/91‑1 (MQ=255) aaCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCttt < 1:3842400/91‑1 (MQ=255) aaCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTAAAAATGTATGCTGATGGATTATCttt > 2:3364173/1‑91 (MQ=255) aCAGCGCATCATGACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCtttt > 1:2976689/1‑91 (MQ=255) aCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCtttt < 1:2815819/91‑1 (MQ=255) aCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCtttt < 1:2214915/91‑1 (MQ=255) aCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCtttt > 2:3590587/1‑91 (MQ=255) aCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCtttt < 1:1926136/91‑1 (MQ=255) cAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCttttt < 1:1417097/91‑1 (MQ=255) cAGCGCATCATAACTCAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGATTTTGAAATGTATGTTGATGGTTTATCttttt > 1:3312266/1‑91 (MQ=255) gttgcgccaacttagtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaa > 2:1534531‑M2/27‑91 (MQ=255) cgcATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaa > 2:2005690/1‑91 (MQ=255) cgcATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaa > 2:1121568/1‑91 (MQ=255) atcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaaaaa > 2:1219040/1‑91 (MQ=255) atcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaaaaa < 1:460513/91‑1 (MQ=255) atAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTg < 1:120687/91‑1 (MQ=255) tAACTTAGTGACGGGGTTTTATTATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGt < 2:3135694/91‑1 (MQ=255) aCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTa > 2:1937165/1‑91 (MQ=255) cTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTaa > 2:392397/1‑91 (MQ=255) tAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATc < 1:1016668/91‑1 (MQ=255) tAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATc < 2:2564637/91‑1 (MQ=255) tgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCg > 2:1657641‑M2/12‑91 (MQ=255) tgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCg < 1:1567996‑M2/80‑1 (MQ=255) gacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGt < 1:504399‑M2/81‑1 (MQ=255) acggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGtt > 2:2892768‑M2/10‑91 (MQ=255) acggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGtt > 2:521273‑M2/10‑91 (MQ=255) ggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTtat > 1:3768788‑M2/8‑91 (MQ=255) ggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTtat < 2:710840‑M2/84‑1 (MQ=255) gggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTtata > 1:2133963‑M2/7‑91 (MQ=255) gggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCATTTAAAAAAATTGTTAATCCCGTtata < 2:2399417‑M2/85‑1 (MQ=255) ggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTatat < 2:439709‑M2/86‑1 (MQ=255) ttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCtt < 2:2615387‑M2/89‑1 (MQ=255) tTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCttt < 2:2190950‑M2/90‑1 (MQ=255) tTATCATAACAATCTACTTTTTCGTAGCCGTCTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCttt > 1:3451079‑M2/2‑91 (MQ=255) tATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCtttt > 1:2726049/1‑91 (MQ=255) tATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCtttt > 2:804602/1‑91 (MQ=255) | AATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTT > USA300TCH1516_ALE/364994‑365173 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |