| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 393589 = | 139 (0.730) | 21 (0.120) | 12/142 | NT | 14.0% | intergenic (+12/+48) | USA300HOU_RS01800/USA300HOU_RS01805 | NAD(P)H‑dependent FAD/FMN reductase/hypothetical protein |
| ? | USA300TCH1516_ALE | 393631 = | 135 (0.800) | intergenic (+54/+6) | USA300HOU_RS01800/USA300HOU_RS01805 | NAD(P)H‑dependent FAD/FMN reductase/hypothetical protein | |||||
ATATGCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/393687‑393589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgtcttTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTTAAG > USA300TCH1516_ALE/393631‑393720 ATATGCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCG < 1:1861971/91‑1 ATGCTTGACATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGCATAGGCGCTCAAACTCTTACTAACGTTGTGTGCCGAG < 2:1167664/91‑1 TGCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGC < 2:1209025/91‑1 TGCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGC < 1:2084596/91‑1 GCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATCGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCG > 1:990769/1‑91 GCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCG > 2:1254661/1‑91 GCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCG > 2:1366233/1‑91 GCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCG > 1:2263409/1‑91 CTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGT > 1:300709/1‑91 CTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGT > 1:404156/1‑91 CTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGT > 1:2792494/1‑91 CTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGT > 1:2792331/1‑91 CTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGT > 2:471166/1‑91 CTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGT < 1:208442/91‑1 CTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGT < 1:1963890/91‑1 TTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTC < 2:514985/91‑1 TTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTC > 2:1471193/1‑91 TTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTC < 2:1496582/91‑1 TGTCATCACTTACCGTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCT < 2:1365004/91‑1 GTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTT < 1:2130866/91‑1 GTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTT > 2:2792717/1‑91 GTCATCACTCGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGCGCGTCTT > 1:1950558/1‑91 GTCATCACTCGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTT > 1:1950546/1‑91 GTTCATTGGCTATATAGTTAATATGCAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTCTCATATTAACTATATAGCCAA > 2:1150442/1‑91 ATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATCGCCAATGAACGACGAT > 2:2980364/1‑91 AAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATG > 2:1054226/1‑91 AGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACA > 1:900557/1‑91 ACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAG > 1:3586303/1‑91 ACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAG > 1:1981866/1‑91 GCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCA > 2:3775711/1‑91 GCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCA > 1:421010/1‑91 CTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCAT > 1:1693317/1‑91 CTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCAT > 1:3828681/1‑91 CTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGG < 1:519451/74‑1 CTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGG > 2:519451/1‑74 TCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATA > 1:3059202/1‑91 TCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATA > 1:1908403/1‑91 CAAACACTTACAAATTTAGTGTGCTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATAT > 2:258627/1‑91 AAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATT > 2:198072/1‑91 AAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATT > 1:625242/1‑91 AAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATT > 2:3305901/1‑91 AAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATT > 1:219682/1‑91 CACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAG > 1:1716415/1‑91 CACTTACAAATTCAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATAGAG > 1:3001872/1‑91 GAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGC < 1:491576/91‑1 GAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGC < 1:492670/91‑1 GAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGC < 1:3637581/91‑1 GAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGC < 2:516439/91‑1 GAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGC > 1:257832/1‑91 GAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGC < 2:229032/91‑1 GAGCGGCTTTTCATATTAACTATATTGCCAATGAACGACTATAAAGGCAAGTGGTGACAAGCATATTGAGGTAATAATGATTGTCATAAGC < 1:3608635/91‑1 AGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCG > 1:318960/1‑91 GCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCtt < 2:3692851/91‑3 GCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGG < 1:2401170/91‑1 CGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGT > 2:1567676/1‑91 GTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTT < 2:295831/91‑1 GTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTT < 2:3515542/91‑1 GTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTT > 2:1542574/1‑91 CTTTTCATATTAACTATATAGCCAATGAACGACGATAAACGCAAGTAATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTTA < 1:3085036/91‑1 TTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTTAA < 1:29043/91‑1 TTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTTAA < 1:2851379/91‑1 TTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTTAA > 1:2550331/1‑91 TTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTTAAG < 2:1753368/91‑1 TTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTTAAG < 2:1752341/91‑1 TTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTTAAG < 1:400316/91‑1 TTTCATATTAACCATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTTAAG < 2:3232113/91‑1 ATATGCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/393687‑393589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgtcttTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTTAAG > USA300TCH1516_ALE/393631‑393720 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |