| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 478764 | 134 (0.700) | 7 (0.040) | 6/140 | NT | 5.3% | coding (1288/1485 nt) | nuoL | NADH‑quinone oxidoreductase subunit L |
| ? | USA300TCH1516_ALE | = 478800 | 132 (0.790) | coding (1324/1485 nt) | nuoL | NADH‑quinone oxidoreductase subunit L | |||||
ATGGCACGTCTTGTTGGTATGATTTTGATTGCAATCGTGACATTTATCTACGTCATCACACATAATTATTTTTACGCTGTATTACAAAATATAACAACAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/478665‑478764‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataacaacacTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGTTATATTTTGTAATACAGCGTAAAAATAATTATGTGTGATGACGTAG < USA300TCH1516_ALE/478800‑478712 ATGGCACGTCTTGTTGGTATGATTTTGATTGCAATCGTGACATTTATCTACGTCATCACACATAATTATTTTTACGCTGTATTACAAAATA > 1:236618/1‑91 TGGCACGTCTTGTTGGTATGATTTTGATTGCAATCGTGACATTTATCTACGTCATCACACATAATTATTTTTACGCTGTATTACAAAATAT > 2:1664507/1‑91 GGCACGTCTTGTTGGTATGATTTTGATTGCAATCGTGACATTTATCTACGTCATCACACATAATTATTTTTACGCTGTATTACAAAATATA > 2:495215/1‑91 GCACGTCTTGTTGGTATGATTTTGATTGCAATCGTGACATTTATCTACGTCATCACACATAATTATTTTTACGCTGTATTACAAAATATAA < 2:1267286/91‑1 CACGTCTTGTTGGTATGATTTTGATTGCAATCGTGACATTTATCTACGTCATCACACATAATTATTTTTACGCTGTATTACAAAATATAAC < 2:551838/91‑1 CACGTCTTGTTGGTATGATTTTGATTGCAATCGTGACATTTATCTACGTCATCACACATAATTATTTTTACGCTGTATTACAAAATATAAC < 2:35852/91‑1 CACGTCTTGTTGGTATGATTTTGATTGCAATCGTGACATTTATCTACGTCATCACACATAATTATTTTTACGCTGTATTACAAAATATAAC < 2:2105513/91‑1 CACGTCTTGTTGGTATGATTTTGATTGCAATCGTGACATTTATCTACGTCATCACACATAATTATTTTTACGCTGTATTACAAAATATAAC < 2:1091733/91‑1 CACGTCTTGTTGGTATGATTTTGATTGCAATCGTGACATTTATCTACGTCATCACACATAATTATTTTTACGCTGTATTACAAAATATAAC < 1:640008/91‑1 ACGTCTTGTTGGTATGCTTTTGATTGCAATCGTGACATTTATCTACGTCATCACACATAATTATTTTTACGCTGTATTACAAAATATAACA < 2:3712477/91‑1 CGTCTTGTTGGTATGATTTTGATTGCAATCGTGACATTTATCTACGTCATCACACATAATTATTTTTACGCTGTATTACAAAATATAACAA < 1:1495924/91‑1 GTCTTGTTGGTATGATTTTGATTGCAATCGTGACATTTATCTACGTCATCACACATAATTATTTTTACGCTGTATTACAAAATATAACAAC > 1:1574014/1‑91 GTCTTGTTGGTATGATTTTGATTGCAATCGTGACATTTATCTACGTCATCACACATAATTATTTTTACGCTGTATTACAAAATATAACAAC > 2:708263/1‑91 GTCTTGTTGGTATGATTTTGATTGCAATCGTGACATTTATCTACGTCATCACACATAATTATTTTTACGCTGTATTACAAAATATAACAAC < 1:3107921/91‑1 TGGTATGATTTTGATTGCAATCGTGACATTTATCTACGTCATCACACATAATTATTTTTACGCTGTATTACAAAATATAACAACACTAATG > 2:874086/1‑91 ACGTCATCACACATAATTATTTTTACGCTGTATTACAAAATATAACAACACTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGT < 2:1296144/91‑1 TCATCACACATAATTATTTTTACGCTGTATTACAAAATATAACAACACTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGT < 1:3792772/91‑1 CATCACACATAATTATTTTTACGCTGTATTACAAAATATAACAACACTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGTT < 1:874086/91‑1 CACACATAATTATTTTTACGCTGTATTACAAAATATAACAACACTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGTTATA < 1:1658510/91‑1 CACACATAATTATTTTTACGCTGTATTACAAAATATAACAACACTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGTTATA < 2:200927/91‑1 ACACATAATTATTTTTACGCTGTATTACAAAATATAACAACACTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGTTATAT < 2:921757/91‑1 ATAATTATTTTTACGCTGTATTACAAAATATAACAACACTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGTTATATTTTG < 2:1198413/91‑1 ATAACAACACTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGTTATATTTTGTAATACAGCGTAAAAATAATTATGTGTGA > 1:768972/1‑91 TAACAACACTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGTTATATTTTGTAATACAGCGTAAAAATAATTATGTGTGAT > 2:2310854/1‑91 TAACAACACTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGTTATATTTTGTAATACAGCGTAAAAATAATTATGTGTGAT > 2:381977/1‑91 TAACAACACTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGTTATATTTTGTAATACAGCGTAAAAATAATTATGTGTGAT < 1:2384929/91‑1 ACAACACTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGTTATATTTTGTAATACAGCGTAAAAATAATTATGTGTGATGA > 1:42751/1‑91 ACAACACTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGTTATATTTTGTAATACAGCGTAAAAATAATTAAGTGTGATGA > 1:42696/1‑91 CACTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGTTATATTTTGTAATACAGCGTAAAAATAATTATGTGTGATGACGTA > 2:2383897/1‑91 CACTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGTTATATTTTGTAATACAGCGTAAAAATAATTATGTGTGATGACGTA > 2:1630219/1‑91 CACTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGTTATATTTTGTAATACAGCGTAAAAATAATTATGTGTGATGACGTA > 1:1692598/1‑91 CACTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGTTATATTTTGTAATACAGCGTAAAAATAATTATGTGTGATGACGTA > 1:495215/1‑91 ACTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGTTATATTTTGTAATACAGCGTAAAAATAATTATGTGTGATGACGTAG > 1:3250903/1‑91 ACTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGTTATATTTTGTAATACAGCGTAAAAATAATTATGTGTGATGACGTAG > 2:2930997/1‑91 ACTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGTTATATTTTGTAATACAGCGTAAAAATAATTATGTGTGATGACGTAG < 1:31000/91‑1 ACTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGTTATATTTTGTAATACAGCGTAAAAATAATTATGTGTGATGACGTAG < 2:71025/91‑1 ATGGCACGTCTTGTTGGTATGATTTTGATTGCAATCGTGACATTTATCTACGTCATCACACATAATTATTTTTACGCTGTATTACAAAATATAACAACAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/478665‑478764‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataacaacacTAATGATGACACTCACTGTAGGCGGCGTTGTCGCATGTGTTGTTATATTTTGTAATACAGCGTAAAAATAATTATGTGTGATGACGTAG < USA300TCH1516_ALE/478800‑478712 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |