| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 492708 = | 102 (0.540) | 23 (0.150) | 10/128 | NT | 20.6% | intergenic (+130/+55) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein |
| ? | USA300TCH1516_ALE | 492758 = | 96 (0.630) | intergenic (+180/+5) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein | |||||
ACGGTGCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/492812‑492708‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgaccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTTT > USA300TCH1516_ALE/492758‑492846 ACGGTGCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATT > 1:251695/1‑91ACGGTGCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATT > 1:1690434/1‑91 GGTGCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCG > 2:1366820/1‑91 GTGCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGA > 2:181126/1‑91 GTGCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGA > 2:271960/1‑91 GTGCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGA > 2:2786018/1‑91 GTGCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGA < 2:2819314/91‑1 TGCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGAC < 2:1683972/91‑1 TGCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGAC < 2:1682158/91‑1 TGCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGAC > 2:192738/1‑91 TGCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGAC < 2:391124/91‑1 TGCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGAC < 2:390712/91‑1 GCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACC > 1:3048387/1‑91 GCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACC < 2:1149425/91‑1 GCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACC > 2:530586/1‑91 GCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACC > 2:538426/1‑91 CTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCA > 1:2750770/1‑91 TAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAA > 1:2770446/1‑91 AGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAct > 2:2926943/1‑89 AGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAAT < 2:736283/91‑1 AGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAAT < 1:2654724/91‑1 AGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAAT < 1:1183019/91‑1 AGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAAT > 1:2880457/1‑91 ATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCC < 1:2492877/91‑1 TTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCCACCAATCCT > 1:3718458/1‑91 TTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCCACCAATCCT > 1:3718274/1‑91 ATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTT > 2:3234883/1‑91 TTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATC < 2:1757241/76‑1 TTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATC > 1:1757241/1‑76 CATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACT > 2:1291115/1‑91 TTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTA > 2:1370861/1‑91 TTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTA > 2:1370840/1‑91 TGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAG > 1:430384/1‑91 TGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTCGTAAATAATCTAG > 1:2788696/1‑91 TGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACCTTGCGAATGCTTGTAAATAATCTAG > 1:3620902/1‑91 GGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGC > 1:2892261/1‑91 GGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGC > 2:2103822/1‑91 TCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCAC > 2:1316920/1‑91 GAACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCG > 1:1251438/1‑91 GAACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCG > 2:2827516/1‑91 GAACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCG > 2:1170774/1‑91 GAACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCG > 2:416101/1‑91 GAACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCG > 1:410932/1‑91 GAACATAGAACATGAAGTTCATTCGACCAACACTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCG > 1:592936/1‑91 AACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGT > 1:1290282/1‑91 AACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGT > 2:2301010/1‑91 AACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGT > 1:2610885/1‑91 AACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGT > 1:1291209/1‑91 ACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTT > 2:1916021/1‑91 ACATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTT > 1:3884594/1‑91 CATAGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTT > 1:3757554/1‑91 AGAACATGAAGTTCATTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTT > 2:3437039/1‑91 TTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACT < 1:1898198/91‑1 TTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACT < 1:3610221/91‑1 TTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACT < 1:1897929/91‑1 TCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTG < 1:938316/91‑1 TCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTG < 1:933959/91‑1 CGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGC > 1:2035913/1‑91 CGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGC > 1:1338186/1‑91 ACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCA < 2:1255410/91‑1 ACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCA < 1:1437010/91‑1 CCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCAC < 2:3147947/91‑1 CCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCAC < 2:2817992/91‑1 CCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCAC > 2:3191448/1‑91 CCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCAC < 2:2625399/91‑1 CCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCAC < 1:390712/91‑1 CCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCAC < 1:391124/91‑1 CAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACT > 1:1779175/1‑91 CAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACT > 1:1779162/1‑91 CAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACT > 1:1788956/1‑91 ATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGC > 2:681118/1‑91 ATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGC > 2:679008/1‑91 ATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGC < 1:341350/91‑1 ATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGC < 2:1359840/91‑1 TCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCT < 2:2158362/91‑1 TCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCT > 2:3320885/1‑91 TCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCT < 1:1805246/91‑1 TCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCT > 1:605876/1‑91 TCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCT > 1:605143/1‑91 CTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTT > 1:1364630/1‑91 CTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTT > 2:1146970/1‑91 CTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTT > 2:3453684/1‑91 CTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTT > 2:1265667/1‑91 CTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTT < 1:2109233/91‑1 CTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTT > 1:2117108/1‑91 CTTTTCTGAATCAGTATTCATGTGTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGCTTGTTATTAAAGTAACAACTGCCACTGCTTT < 2:2961375/91‑1 TTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTT > 1:2627129/1‑91 TTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTT > 2:3225/1‑91 TTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTT > 2:3181/1‑91 TTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTT < 2:2898562/91‑1 TTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTT < 1:3851795/91‑1 TTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTT > 1:3591021/1‑91 TTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTTT < 2:3069080/91‑1 TTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTTT > 2:2576477/1‑91 ACGGTGCTAGATTATTTACAAGCATTCGCAAAGTAAAACATGAATACTAATTCAGAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/492812‑492708‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgaccaatccttttCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTTTGTTATTAAAGTAACAACTGCCACTGCTTTTTT > USA300TCH1516_ALE/492758‑492846 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |