| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 492708 = | 102 (0.540) | 23 (0.150) | 10/128 | NT | 20.6% | intergenic (+130/+55) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein |
| ? | USA300TCH1516_ALE | 492758 = | 96 (0.630) | intergenic (+180/+5) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein | |||||
Only 100 of 277 total aligned reads displayed.
TTTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAA > USA300TCH1516_ALE/492618‑492797 | tttCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAA > 1:192738‑M1/1‑91 (MQ=255) tCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAA < 1:3345256‑M1/91‑1 (MQ=255) aaaaagcagtggcagttgttactttaataacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagaaa < 1:3851795‑M1/3‑1 (MQ=255) aaaagcagtggcagttgttactttaataacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagaaaa > 1:2627129‑M1/88‑91 (MQ=255) acaAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAG < 2:2671306‑M1/91‑1 (MQ=255) aaagcagtggcagttgttactttaataacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAg > 1:2117108‑M1/87‑91 (MQ=255) agcagtggcagttgttactttaataacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGa > 1:605143‑M1/85‑91 (MQ=255) aaGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGA < 2:3637685‑M1/91‑1 (MQ=255) aaGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGA > 1:2786018‑M1/1‑91 (MQ=255) gcagtggcagttgttactttaataacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGAt > 2:679008‑M1/84‑91 (MQ=255) gcagtggcagttgttactttaataacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGAt < 2:1359840‑M1/8‑1 (MQ=255) gCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATT > 2:16707‑M1/1‑91 (MQ=255) agtggcagttgttactttaataacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTg > 1:1788956‑M1/82‑91 (MQ=255) tGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGG < 2:3683740‑M1/91‑1 (MQ=255) gtggcagttgttactttaataacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTgg < 1:391124‑M1/11‑1 (MQ=255) gtggcagttgttactttaataacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTgg < 2:3147947‑M1/11‑1 (MQ=255) gAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGT < 1:2853586‑M1/91‑1 (MQ=255) aaaGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCACAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCG > 2:3183285‑M1/1‑91 (MQ=255) aaaGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCG > 2:2325151‑M1/1‑91 (MQ=255) aaaGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCG > 2:2297813‑M1/1‑91 (MQ=255) cagttgttactttaataacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGa < 1:933959‑M1/15‑1 (MQ=255) ggATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGaa < 1:3044541/91‑1 (MQ=255) ggATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGaa < 1:1147680/91‑1 (MQ=255) ggATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGaa < 2:2620216/91‑1 (MQ=255) gATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAAc > 2:2109233/1‑91 (MQ=255) gATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATG‑AAAAGGATTGGTCGAAcataga > 2:2142546‑M1/1‑85 (MQ=255) aTTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTACTAGGATTTTTTGTATATGAAAAAGGATTGGTCGAATGTACt > 1:1359840/1‑91 (MQ=255) aTTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACt < 1:822480/91‑1 (MQ=255) aTTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACt > 1:3747910/1‑91 (MQ=255) tGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTc > 1:3126809/1‑91 (MQ=255) tGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTc < 1:1406773/91‑1 (MQ=255) aaTCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCAt < 2:3067609/91‑1 (MQ=255) tCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGt < 1:1874676/91‑1 (MQ=255) aacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCt > 2:3437039‑M1/61‑91 (MQ=255) aaTTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttc < 1:3171073‑M1/91‑18 (MQ=255) aaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATg > 1:3757554‑M1/58‑91 (MQ=255) aTTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTAATATAAAAAAAAAAGGATTGGTCGAATGAACTTCATGTTCTATg < 2:2870629/91‑1 (MQ=255) ttttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGt > 1:3191262‑M2/1‑90 (MQ=255) ttttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGt < 1:614331‑M2/91‑2 (MQ=255) ttttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGt < 1:1476532‑M2/91‑2 (MQ=255) tttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttcatt < 2:616309‑M1/91‑21 (MQ=255) tttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttcatt < 2:1589143‑M1/91‑21 (MQ=255) acggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGtt > 1:1291209‑M1/56‑91 (MQ=255) ttATGGCGGGGCTATCAAAGTCGTGCTTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttc < 2:895398‑M2/91‑4 (MQ=255) ttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttcattc < 2:2549529‑M1/91‑22 (MQ=255) cggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTc > 2:416101‑M1/55‑91 (MQ=255) cggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTc > 2:1170774‑M1/55‑91 (MQ=255) aTGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcga < 2:1900997‑M2/91‑6 (MQ=255) tGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgac < 2:185633‑M2/91‑7 (MQ=255) tGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgac < 2:669443‑M2/91‑7 (MQ=255) tGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgac > 2:2311770‑M2/1‑85 (MQ=255) ggCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttcattcgacc < 2:2087150‑M1/91‑26 (MQ=255) ggCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttcattcgacc < 1:2655957‑M1/91‑26 (MQ=255) gCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgacca < 2:3457026‑M2/91‑9 (MQ=255) gCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgacca > 1:2075602‑M2/1‑83 (MQ=255) ctagattatttacaagcattcgcaaggtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCa > 1:3620902‑M1/50‑91 (MQ=255) ggggCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaat > 1:3578389‑M2/1‑81 (MQ=255) ggCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcc > 2:3268036‑M2/1‑79 (MQ=255) gCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcct > 1:2530251‑M2/1‑78 (MQ=255) gCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcct > 2:154915‑M2/1‑78 (MQ=255) gCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcct > 2:2734223‑M2/1‑78 (MQ=255) tCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTc > 2:1161813/1‑91 (MQ=255) tCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTc > 1:2817992/1‑91 (MQ=255) cAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCt > 2:946631/1‑91 (MQ=255) aaaGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTg < 1:1736769/91‑1 (MQ=255) aaGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGa < 1:5759/91‑1 (MQ=255) aGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGaa > 1:2454168/1‑91 (MQ=255) aGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGaa > 1:2602972/1‑91 (MQ=255) gTGATTGTTGTAATAGGAATTTTTGTATATGAAAA > 1:449773‑M1/1‑35 (MQ=255) gTGATTGTTGTAATAGGAATTTTTGTATATGAAAA < 2:449789‑M1/35‑1 (MQ=255) aTTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAt > 1:2034180/1‑91 (MQ=255) aTTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAt < 1:2390248/91‑1 (MQ=255) aTTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAt > 1:2821845/1‑91 (MQ=255) aTTGTTGTAATAGAAATTTTTGTATATGAAAAAGGTTTGGTCGAATGAACTTCAGGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAt < 2:1083309/91‑1 (MQ=255) ttgttgTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAtt < 1:532870/91‑1 (MQ=255) ttgtAATAGGAATTTTTGTATAAGAAAAAGGATTGGTCGAAcatagaacatgaagttcattcgaccaatcctttttcttatacaaaaattc > 2:3770889‑M1/1‑41 (MQ=255) agtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATg > 2:1291115‑M1/25‑91 (MQ=255) gtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatccttttcatatacaaaaattccta < 1:2142546‑M2/91‑35 (MQ=255) aGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTAc < 2:1958599/91‑1 (MQ=255) aaTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACttt > 2:1419474/1‑91 (MQ=255) aTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTg < 2:2922115/91‑1 (MQ=255) aTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTg < 1:2997539/91‑1 (MQ=255) ttttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCg > 1:2893134/1‑91 (MQ=255) ttttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCg < 2:547818/91‑1 (MQ=255) ttttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCg < 2:690333/91‑1 (MQ=255) tttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGa > 1:3538721/1‑91 (MQ=255) ttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGaa < 2:2186003/91‑1 (MQ=255) tGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAAt > 1:1754909/1‑91 (MQ=255) tGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAAt < 1:1036553/91‑1 (MQ=255) tataTGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGc > 2:3465431/1‑91 (MQ=255) tataTGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGc > 2:279918/1‑91 (MQ=255) tataTGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGc < 2:2712124/91‑1 (MQ=255) tataTGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGc < 1:45130/91‑1 (MQ=255) tataTGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGc < 1:1056427/91‑1 (MQ=255) atatGAAAAAGGATTGGTCGAATGAACTTCATGCTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCt < 1:1252635/91‑1 (MQ=255) tatGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCtt > 2:3012130/1‑91 (MQ=255) tatGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCtt > 1:3377596/1‑91 (MQ=255) atGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTg < 2:1476532/91‑1 (MQ=255) tGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGt < 2:2902006/91‑1 (MQ=255) tGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGt > 1:1529062/1‑91 (MQ=255) | TTTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAA > USA300TCH1516_ALE/492618‑492797 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |