| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 650751 = | 209 (1.100) | 27 (0.150) | 15/152 | NT | 13.3% | intergenic (+3/+49) | USA300HOU_RS03100/rclA | hypothetical protein/putative pyridine nucleotide‑disulfide oxidoreductase RclA |
| ? | USA300TCH1516_ALE | 650786 = | 155 (0.860) | intergenic (+38/+14) | USA300HOU_RS03100/rclA | hypothetical protein/putative pyridine nucleotide‑disulfide oxidoreductase RclA | |||||
CATCCTACGATGGCCGAATCATTTAATGATTTATTTAATTTCTAGACAAAACATAAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/650844‑650751‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACGGTATAT > USA300TCH1516_ALE/650786‑650875 CATCCTACGATGGCCGAATCATTTACTGATTTATTTAATTTCTAGACAAAACATAAAAACCTGGTGGCACGCATTGAATGATGCTGCCATC > 2:2514159/1‑91CATCCTACGATGGCCGAATCATTTAATGATTTATTTAATTTCTAGACAAAACATAAAAACCTGGTGGCACGCATTGAATGATGCTGCCATC < 1:1506640/91‑1CATCCTACGATGGCCGAATCATTTAATGATTTATTTAATTTCTAGACAAAACATAAAAACCTGGTGGCACGCATTGAATGATGCTGCCATC < 2:1630065/91‑1CATCCTACGATGGCCGAATCATTTAATGATTTATTTAATTTCTAGACAAAACATAAAAACCTGGTGGCACGCATTGAATGATGCTGCCATC > 2:2923436/1‑91 ATCCTACGATGGCCGAATCATTTAATGATTTATTTAATTTCTAGACAAAACATAAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCA < 2:1942239/91‑1 ATCCTACGATGGCCGAATCATTTAATGATTTATTTAATTTCTAGACAAAACATAAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCA > 1:1485858/1‑91 ATCCTACGATGGCCGAATCATTTAATGATTTATTTAATTTCTAGACAAAACATAAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCA < 2:167814/91‑1 TCCTACGATGGCCGAATCATTTAATGATTTATTTAATTTCTAGACAAAACATAAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAG < 1:3730880/91‑1 ATTTATTTAATTTCTAGACAAAACATAAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGTTTTTATGTTTTGTCTAGAAATTAA > 1:3510025/1‑91 CATAAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTGGGCC > 1:3235165/1‑91 CATAAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCC > 1:1765681/1‑91 CATAAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCC > 1:1766081/1‑91 CATAAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCC > 1:3375563/1‑91 CATAAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCC > 1:3376243/1‑91 TAAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCAT > 2:1295491/1‑91 AAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATC > 2:1649569/1‑91 AAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCG > 2:1013860/1‑91 AAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGT > 1:3727488/1‑91 CTGGTGGCACGCATTGAATGATGCTGCCATCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGA > 2:1454465/1‑91 TGGTGGCACGCATTGAATGATGCTGCCATCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGAT > 1:1841268/1‑91 TGGTGGCACGCATTGAATGATGCTGCCATCAGGCTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGAT > 1:3635269/1‑91 GGTGGCACGCATTGAATGATGCTGCCATCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATG > 2:3218015/1‑91 GGTGGCACGCATTGAATGATGCTGCCATCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATG > 1:1503299/1‑91 GGCACGCATTGAATGATGCTGCCATCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGT > 1:2720451/1‑91 CACGCATTGAATGATGCTGCCATCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTAT > 1:155736/1‑91 ACGCATTGAATGATGCTGCCATCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATA > 1:2908394/1‑91 ACGCATTGAATGATGCTGCCATCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATA > 1:161432/1‑91 ACGCATTGAATGATGCTGCCATCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATA > 1:161424/1‑91 ACGCATTGAATGATGCTGCCATCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATA > 1:1188546/1‑91 CGCATTGAATGATGCTGCCATCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAA > 2:470480/1‑91 GCATTGAATGATGCTGCCATCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAA > 2:2853623/1‑91 GCATTGAATGATGCTGCCATCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAA > 1:2528670/1‑91 GCATTGAATGATGCTGCCATCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAA > 1:1828933/1‑91 GCATTGAATGATGCTGCCATCAGGCTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAA > 1:2319099/1‑91 GAATGATGCTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTA > 1:119530/1‑91 GCCATCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATA > 1:2798644/1‑91 CAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACGGTA > 2:2258275/1‑91 GGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACGGTATA < 1:823958/91‑1 GTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACGGTATAT < 2:1519286/91‑1 GTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACGGTATAT > 1:340667/1‑91 GTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACGGTATAT > 1:340340/1‑91 GTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACGGTATAT < 2:460816/91‑1 CATCCTACGATGGCCGAATCATTTAATGATTTATTTAATTTCTAGACAAAACATAAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/650844‑650751‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACGGTATAT > USA300TCH1516_ALE/650786‑650875 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |