| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 672729 | 217 (1.140) | 16 (0.090) | 8/148 | NT | 7.0% | intergenic (+331/‑48) | nth_1/btuF | Endonuclease III/Vitamin B12‑binding protein |
| ? | USA300TCH1516_ALE | = 672751 | 224 (1.270) | intergenic (+353/‑26) | nth_1/btuF | Endonuclease III/Vitamin B12‑binding protein | |||||
CAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/672635‑672729‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcccACTTTTCGCTTTAGCGATTAGAGGGATTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGGCTTTT < USA300TCH1516_ALE/672751‑672662 CAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA > 2:1920073/1‑91 GTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATC < 1:1108703/91‑1 GTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATC > 2:124817/1‑91 GTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATC > 2:124702/1‑91 TTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCC < 1:103245/91‑1 TTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCC < 2:3171192/91‑1 TTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCC < 1:2191879/91‑1 TTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCC < 1:2559606/91‑1 TTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCC > 1:2580572/1‑91 TGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCC > 1:1154011/1‑91 TGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCC < 2:3645502/91‑1 TGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCC < 2:1241259/91‑1 AAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCACTTTTCG > 2:728303/1‑91 TGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCACTTTTCGCTTTAGCGAT < 1:3048759/91‑1 TGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCACTTTTCGCTTTAGCGAT < 1:728303/91‑1 AAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCACTTTTCGCTTTAGCGATTAGAG < 2:445455/91‑1 AAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCACTTTTCGCTTTAGCGATTAGAG < 1:929085/91‑1 AAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCACTTTTCGCTTTAGCGATTAGAGG < 1:2607591/91‑1 AAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCACTTTTCGCTTTAGCGATTAGAGG < 2:3356939/91‑1 AAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCACTTTTCGCTTTAGCGATTAGAGG < 1:1665594/91‑1 AAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCACTTTTCGCTTTAGCGATTAGAGG < 2:3693999/91‑1 AAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCACTTTTCGCTTTAGCGATTAGAGGG < 2:2182169/91‑1 AAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCACTTTTCGCTTTAGCGATTAGAGGG < 2:2182196/91‑1 AAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCACTTTTCGCTTTAGCGATTAGAGGG < 2:2182517/91‑1 AGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTTGATGCTACCGCACAACTGCATAAATCCCACTTTTCGCTTTAGCGATTAGAGGGA < 2:3832918/91‑1 AGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCACTTTTCGCTTTAGCGATTAGAGGGA < 1:2779799/91‑1 ATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCACTTTTCGCTTTAGCGATTAGAGGGATTTATGCA < 1:3834374/91‑1 TCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCACTTTTCGCTTTAGCGATTAGAGGGATTTATGCAG < 1:2732825/91‑1 agTCCCGCTTTTCGCTTTAGCGATTAGAGGGGTTTATGCAGTTGTGCGGTAGCAGCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGG < 2:1283978/89‑1 AATCCCACTTTTCGCTTTAGCGATTAGAGGGATTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGG > 1:1360254/1‑91 AATCCCACTTTTCGCTTTAGCGATTAGAGGGATTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGG > 2:543941/1‑91 ATCCCACTTTTCGCTTTAGCGATTAGAGGGATTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGCTTAGAGGC > 1:3419068/1‑91 ATCCCACTTTTCGCTTTAGCGATTAGAGGGATTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGCGGC > 2:2627886/1‑91 ATCCCACTTTTCGCTTTAGCGATTAGAGGGATTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGGC > 2:365399/1‑91 TCCCACTTTTCGCTTTAGCGATTAGAGGGATTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGGCT < 1:2099215/91‑1 TCCCACTTTTCGCTTTAGCGATTAGAGGGATTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGGCT < 1:2099204/91‑1 CCCACTTTTCGCTTTAGCGATTAGAGGGATTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGGCTT > 1:2828397/1‑91 CCCACTTTTCGCTTTAGCGATTAGAGGGATTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGGCTT > 1:2828410/1‑91 CCCACTTTTCGCTTTAGCGATTAGAGGGATTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGGCTT > 1:938947/1‑91 CCCACTTTTCGCTTTAGCGATTAGAGGGATTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGGCTT < 2:2877126/91‑1 CCACTTTTCGCTTTAGCGATTAGATGGATTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGGCTTT < 2:3619913/91‑1 CCACTTTTCGCTTTAGCGATTAGAGGGATTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGGCTTT < 1:2574457/91‑1 CCACTTTTCGCTTTAGCGATTAGAGGGATTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGGCTTT < 1:1904417/91‑1 CCACTTTTCGCTTTAGCGATTAGAGGGATTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGGCT > 2:2227408/1‑89 CCACTTTTCGCTTTAGCGATTAGAGGGATTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGGCT < 1:2227408/89‑1 CACTTTTCGCTTTAGCGATTAGAGGGATTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGGCTTTT > 2:290037/1‑91 CACTTTTCGCTTTAGCGATTAGAGGGATTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGGCTTTT > 1:884124/1‑91 CACTTTTCGCTTTAGCGATTAGAGGGATTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGGCTTTT > 1:884102/1‑91 CAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/672635‑672729‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcccACTTTTCGCTTTAGCGATTAGAGGGATTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGGCTTTT < USA300TCH1516_ALE/672751‑672662 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |