BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 672729	217 (1.140)	16 (0.090)	8/148	NT	7.0%	intergenic (+331/‑48)	nth_1/btuF	Endonuclease III/Vitamin B12‑binding protein
*	?	USA300TCH1516_ALE	= 672751	224 (1.270)	16 (0.090)	8/148	NT	7.0%	intergenic (+353/‑26)	nth_1/btuF	Endonuclease III/Vitamin B12‑binding protein

Only 100 of 323 total aligned reads displayed.

TGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTATTTTGATTTTTATGCTTG  >  USA300TCH1516_ALE/672639‑672819

   aTGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCctct                                                                                           >  1:1712192/1‑91 (MQ=255)

     gCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTaa                                                                                         <  1:3286350/91‑1 (MQ=255)

        aaGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCacttttcg                                                                                      >  2:728303‑M1/1‑83 (MQ=255)

        aaGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCg                                                                                      >  1:1219184/1‑91 (MQ=255)

        aaGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCg                                                                                      <  2:832653/91‑1 (MQ=255)

           gCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTa                                                                                   >  2:3662357/1‑91 (MQ=255)

            cacaACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTaa                                                                                  <  1:2222411/91‑1 (MQ=255)

             acaACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTaaa                                                                                 <  1:3145418/91‑1 (MQ=255)

               aaCTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGc                                                                               <  2:1717551/91‑1 (MQ=255)

                 cTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGa                                                                             <  1:1171579/91‑1 (MQ=255)

                  tGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCacttttcgctttagcgat                                                                            <  1:3048759‑M1/91‑19 (MQ=255)

                  tGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGaa                                                                            >  1:1056271/1‑91 (MQ=255)

                   gCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGaaa                                                                           >  1:1108660/1‑91 (MQ=255)

                   gCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGaaa                                                                           <  1:1503445/91‑1 (MQ=255)

                   gCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGaaa                                                                           <  2:3787563/91‑1 (MQ=255)

                       aaaaGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTg                                                                       >  1:884102‑M2/1‑90 (MQ=255)

                        aaaGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCacttttcgctttagcgattagagg                                                                      <  2:3693999‑M1/91‑25 (MQ=255)

                        aaaGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCacttttcgctttagcgattagagg                                                                      <  2:3356939‑M1/91‑25 (MQ=255)

                        aaaGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCacttttcgctttagcgattagagg                                                                      <  1:1665594‑M1/91‑25 (MQ=255)

                        aaaGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCATCTAATCGCTAAAGCGAAAAGTgg                                                                      <  2:3619913‑M2/91‑3 (MQ=255)

                         aaGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCacttttcgctttagcgattagaggg                                                                     <  2:2182196‑M1/91‑26 (MQ=255)

                         aaGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTggg                                                                     >  1:2828410‑M2/1‑88 (MQ=255)

                         aaGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTggg                                                                     <  2:2877126‑M2/91‑4 (MQ=255)

                          aGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTggga                                                                    <  1:2099204‑M2/91‑5 (MQ=255)

                           gCCTCTAAGCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTgggat                                                                   >  1:3419068‑M2/1‑86 (MQ=255)

                             ctctAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTa                                                                 <  2:1670599/91‑1 (MQ=255)

                             ctctAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTa                                                                 >  1:3678831/1‑91 (MQ=255)

                                 aaTCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTaaaaa                                                             >  1:1452827/1‑91 (MQ=255)

                                  aTCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAg                                                            <  2:2604473/91‑1 (MQ=255)

                                  aTCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAg                                                            >  1:2360174/1‑91 (MQ=255)

                                   tCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAgg                                                           >  2:2508886/1‑91 (MQ=255)

                                     gCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAACAAGgag                                                         >  2:2852805/1‑91 (MQ=255)

                                      cTAAAGATGAAGAGGAACGCAGTTGGATGCTGCCGCACAACTGCATAAAACCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGgaga                                                        <  2:3198656/91‑1 (MQ=255)

                                      cTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGgaga                                                        <  2:2580423/91‑1 (MQ=255)

                                      cTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGgaga                                                        >  1:384982/1‑91 (MQ=255)

                                       tAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGAt                                                       <  2:2254919/91‑1 (MQ=255)

                                         aaGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGAtgt                                                     <  2:405364/91‑1 (MQ=255)

                                           gATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGa                                                   <  1:2000112/91‑1 (MQ=255)

                                            aTGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGAt                                                  <  2:3842487/91‑1 (MQ=255)

                                             tGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATa                                                 >  2:2405969/1‑91 (MQ=255)

                                              gAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑g                                              >  2:1039293/1‑91 (MQ=255)

                                               aaGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑gt                                             <  1:413149/91‑1 (MQ=255)

                                                agagGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTAGGATTAAAAAGGAGATATGATA‑‑gtg                                            >  2:3368771/1‑91 (MQ=255)

                                                 gagGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑gtgt                                           >  1:3403889/1‑91 (MQ=255)

                                                  agGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑Gtgtg                                          >  2:2090766/1‑91 (MQ=255)

                                                   ggAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTga                                         <  2:909682/91‑1 (MQ=255)

                                                   ggAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTga                                         >  1:324093/1‑91 (MQ=255)

                                                      aCGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTgaaga                                      >  2:515630/1‑91 (MQ=255)

                                                       cGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATCAAAAAGGAGATGTGATA‑‑GTGTgaagaa                                     >  2:3496029/1‑91 (MQ=255)

                                                        gCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGaaa                                    <  1:1299310/91‑1 (MQ=255)

                                                        gCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGaaa                                    <  1:889538/91‑1 (MQ=255)

                                                           gTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCg                                 <  2:622430/91‑1 (MQ=255)

                                                             tGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGtt                               >  2:1010227/1‑91 (MQ=255)

                                                             tGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGtt                               <  1:2605116/91‑1 (MQ=255)

                                                             tGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGtt                               <  1:687009/91‑1 (MQ=255)

                                                             tGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGtt                               >  2:1314380/1‑91 (MQ=255)

                                                              ggATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTa                              <  2:3094087/91‑1 (MQ=255)

                                                                aTGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAAt                            <  2:1609781/91‑1 (MQ=255)

                                                                 tGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTGAtt                           >  1:296767/1‑91 (MQ=255)

                                                                 tGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAAtt                           <  1:791581/91‑1 (MQ=255)

                                                                 tGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAAtt                           >  2:2922521/1‑91 (MQ=255)

                                                                  gCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTg                          >  1:191021/1‑91 (MQ=255)

                                                                  gCTACCGCACAACTGCATAAAACCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTg                          <  2:2379202/91‑1 (MQ=255)

                                                                  gCTACCGCACAACTGCATAAAACCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTg                          <  2:3702719/91‑1 (MQ=255)

                                                                   cTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGc                         >  1:3529235/1‑91 (MQ=255)

                                                                     aCCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCtt                       <  2:218703/91‑1 (MQ=255)

                                                                     aCCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCtt                       <  1:2437605/91‑1 (MQ=255)

                                                                       cGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCtttt                     >  2:1985120/1‑91 (MQ=255)

                                                                        gCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTa                    >  1:2517162/1‑91 (MQ=255)

                                                                         cacaACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTAt                   >  2:1963629/1‑91 (MQ=255)

                                                                          acaACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTAtt                  <  2:1246437/91‑1 (MQ=255)

                                                                           caACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTAttt                 <  1:1608185/91‑1 (MQ=255)

                                                                           caACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTAttt                 >  2:2521202/1‑91 (MQ=255)

                                                                           caACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTAttt                 >  1:541928/1‑91 (MQ=255)

                                                                           aaaCTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTAttt                 <  2:1482488/90‑1 (MQ=255)

                                                                             actacATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTATTTTg               >  2:1158293/5‑91 (MQ=255)

                                                                              cTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTgggatttatgcagttgtgcggtagcatccaactgcgttcctcttcatctttagcga                <  1:2732825‑M2/91‑57 (MQ=255)

                                                                              cTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTATTTTGa              >  1:2168652/1‑91 (MQ=255)

                                                                              cTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTATTTTGa              <  1:2142487/91‑1 (MQ=255)

                                                                              cTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTGAATTGCTTTTATTTTGa              >  1:2610411/1‑91 (MQ=255)

                                                                               tGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTgggatttatgcagttgtgcggtagcatccaactgcgttcctcttcatctttagcgat               <  1:3834374‑M2/91‑58 (MQ=255)

                                                                               tGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTATTTTGAt             >  1:590334/1‑91 (MQ=255)

                                                                               tGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTATTTTGAt             >  1:3340494/1‑91 (MQ=255)

                                                                                 cATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATAGTGTGTGAAGAAATCGTTAATTGCTTTTATTTTGAt             >  1:1894889/1‑91 (MQ=255)

                                                                                  aTAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTATTTTGAtttt          >  1:2230649/1‑91 (MQ=255)

                                                                                   tAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTATTTTGAttttt         >  1:162525/1‑91 (MQ=255)

                                                                                   tAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTATTTTGAttttt         <  1:2052251/91‑1 (MQ=255)

                                                                                    aaaTCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTATTTTGATTTTTa        <  2:1904417/91‑1 (MQ=255)

                                                                                    aaaTCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTATTTTGATTTTTa        >  2:3650013/1‑91 (MQ=255)

                                                                                     caTCCCTCTAATCGCTAAAGCGCCAAGGGGGCTTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTATTTTGATTTTTAt       >  2:299999/2‑91 (MQ=255)

                                                                                     aaTCCCacttttcgctttagcgattagagggatttatgcagttgtgcggtagcatccaactgcgttcctcttcatctttagcgattagagg         >  1:1360254‑M1/1‑6 (MQ=255)

                                                                                     aaTCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTATTTTGATTTTTAt       >  2:2769762/1‑91 (MQ=255)

                                                                                       tCCCTCTAATCGCTAAAGCGAAAAGTgggatttatgcagttgtgcggtagcatccaactgcgttcctcttcatctttagcgattagaggct       <  1:2779799‑M2/91‑66 (MQ=255)

                                                                                        cccacttttcgctttagcgattagagggatttatgcagttgtgcggtagcatccaactgcgttcctcttcatctttagcgattagaggctt      >  1:2828397‑M1/1‑3 (MQ=255)

                                                                                        cccacttttcgctttagcgattagagggatttatgcagttgtgcggtagcatccaactgcgttcctcttcatctttagcgattagaggctt      >  1:938947‑M1/1‑3 (MQ=255)

                                                                                        cccTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTATTTTGATTTTTATGCt    <  2:1087959/91‑1 (MQ=255)

                                                                                         ccTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTATTTTGATTTTTATGCtt   >  2:3565276/1‑91 (MQ=255)

                                                                                         ccTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTATTTTGATTTTTATGCtt   <  2:3529235/91‑1 (MQ=255)

                                                                                          ctctAATCGCTAAAGCGAAAAGTgggatttatgcagttgtgcggtagcatccaactgcgttcctcttcatctttagcgattagaggctttt    <  2:445455‑M2/91‑69 (MQ=255)

                                                                                          ctctAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTATTTTGATTTTTATGCTTg  >  1:1162795/1‑91 (MQ=255)

TGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAATCCCTCTAATCGCTAAAGCGAAAAGTGGGATTAAAAAGGAGATGTGATA‑‑GTGTGAAGAAATCGTTAATTGCTTTTATTTTGATTTTTATGCTTG  >  USA300TCH1516_ALE/672639‑672819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.