| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 678853 | 143 (0.750) | 25 (0.150) | 13/136 | NT | 16.8% | intergenic (+56/+195) | pip/sarA | Proline iminopeptidase/Transcriptional regulator SarA |
| ? | USA300TCH1516_ALE | = 678873 | 127 (0.790) | intergenic (+76/+175) | pip/sarA | Proline iminopeptidase/Transcriptional regulator SarA | |||||
AGCATTTATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/678752‑678853‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaagctgattTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGATACGCTTT < USA300TCH1516_ALE/678873‑678784 AGCATTTATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGA < 1:93648/91‑1 GCATTTATGCATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAA < 1:3722265/91‑1 GCATTTATGAATTATTATTTAAAATATTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAA > 2:1748633/1‑91 CATTTATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAA > 1:1105171/1‑91 CATTTATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAA > 2:3805948/1‑91 CATTTATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAA > 2:3805807/1‑91 CATTTATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAA > 1:3779605/1‑91 ATTTATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAA < 1:1459864/91‑1 ATTTATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAA < 1:1460205/91‑1 TTTATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAA < 2:767937/91‑1 TTTATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAA > 2:3508273/1‑91 TTTATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAA > 1:3708522/1‑91 TTTATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAA > 1:3496737/1‑91 TTTATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAA > 1:2940877/1‑91 TTATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAG > 2:3254566/1‑91 TTATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAG > 1:449192/1‑91 ATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAGAGCT < 1:3064094/91‑1 ATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAGAGCT < 1:3064540/91‑1 ATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCT > 2:2201406/1‑91 ATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCT > 2:3718001/1‑91 TGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTG < 2:2658146/91‑1 TGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTG < 1:440213/91‑1 TGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTG > 2:1323248/1‑91 GAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGA < 2:1897173/91‑1 AATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGAT < 1:18082/91‑1 AATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGAT < 1:3857242/91‑1 ATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATT < 2:1286448/91‑1 ATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATT > 2:391071/1‑91 ATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCATTAGAAAAAGTAAAAAAGCTGATT < 2:2745372/91‑1 TATTATTTAAAATTTTTAAAAGGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTC < 1:3732915/91‑1 AAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAAT < 1:2659710/91‑1 AATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAA < 2:294199/91‑1 TTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAATG < 2:1070491/91‑1 TTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAATGA < 1:1639984/91‑1 TTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAATGA < 1:1640016/91‑1 TTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAATGAA < 2:2585092/91‑1 AAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGGAATGTGAAAAAGCTGATTTCTATCAAATAATGAATAG < 1:3281282/91‑1 AAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAATGAATAGT < 1:2325030/91‑1 AAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAATGAATAGT < 1:2324030/91‑1 AGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAATGAATAGTAAT < 1:1679991/91‑1 AGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAATGAATAGTAAT < 1:1633911/91‑1 AGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAATGAATAGTAAT < 2:3858091/91‑1 AGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAATGAATAGTAAT < 2:483048/91‑1 GCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAATGAATAGTAATC < 1:895549/91‑1 GCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAATGAATAGTAATC < 2:3351832/91‑1 GCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAATGAATAGTAATC < 1:1707453/91‑1 GCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAATGAATAGTAATC < 2:3723780/91‑1 CGTCTCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAACCGCTGATTTCTATCAAATAATGAATAGTAATCA < 2:3085235/91‑1 CGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCA < 2:2003407/91‑1 CGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCA < 1:867358/91‑1 TATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGC < 2:1571438/91‑1 TATCAGAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGC < 1:769289/91‑1 TCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTT < 1:1595090/91‑1 TCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTT < 1:3138713/91‑1 CATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCC < 1:331595/91‑1 AAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTA > 1:748662/1‑91 tAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTAT < 2:3845152/90‑1 AAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTAT < 2:71705/91‑1 AAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTAT < 2:2456233/91‑1 AAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATG < 2:3116731/91‑1 AAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATG > 2:2798712/1‑91 AAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATG < 2:3116724/91‑1 AAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGA < 1:61104/91‑1 AAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGA < 1:2737527/91‑1 AAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGA < 1:1881260/91‑1 AAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGA < 2:1270205/91‑1 AAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGA < 2:2687084/91‑1 AAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTACCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGA < 2:3064684/91‑1 AGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGAT > 2:756295/1‑91 AGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGAT < 2:1013322/91‑1 AGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGAT > 2:290099/1‑91 GCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGATA > 2:212024/1‑91 CTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGATAC > 1:42735/1‑91 CTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGATAC < 1:1769909/91‑1 CTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGATAC < 2:3555758/91‑1 CTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGATAC < 2:3555759/91‑1 CTGATTTCNATCNANTAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGATAC < 1:907543/91‑1 TGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTATGTTTATATATCACATATTATGATACG < 2:2695612/91‑1 TGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGATACG > 2:1440428/1‑91 TGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGATACG > 2:3746508/1‑91 TGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATAATACG < 2:2425527/91‑1 GATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGATACGC > 2:1916145/1‑91 GATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGATACGC > 2:452668/1‑91 ATTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGATACGCT > 2:661098/1‑91 TTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGATACGCTT > 1:1607926/1‑91 TTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGATACGCTT < 1:350175/91‑1 TTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGATACGCTT < 2:3636272/91‑1 TTTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGATACGCTT < 2:303014/91‑1 TTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGATACGCTTT < 1:2132616/91‑1 AGCATTTATGAATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/678752‑678853‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaagctgattTCTATCAAATAATGAATAGTAATCAGCTTTTTCACATTGCCTAAGGACTTTATGCCCTAGGTTTATATATCACATATTATGATACGCTTT < USA300TCH1516_ALE/678873‑678784 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |