| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 678853 | 143 (0.750) | 25 (0.150) | 13/136 | NT | 16.8% | intergenic (+56/+195) | pip/sarA | Proline iminopeptidase/Transcriptional regulator SarA |
| ? | USA300TCH1516_ALE | = 678873 | 127 (0.790) | intergenic (+76/+175) | pip/sarA | Proline iminopeptidase/Transcriptional regulator SarA | |||||
Only 100 of 341 total aligned reads displayed.
ATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGC > USA300TCH1516_ALE/678763‑678943 | ttaagaggttttgcactaatggcacttaatataaggaagatagccgcataacgagcagtatatatcaaatacatttcaaAAAAAGCTGAtt < 1:405125‑M1/12‑1 (MQ=255)ttaagaggttttgcactaatggcacttaatataaggaagatagccgcataacgagcagtatatatcaaatacatttcaaAAAAAGCTGAtt < 1:3432549‑M1/12‑1 (MQ=255) ttattattTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTa > 2:2667816/1‑91 (MQ=255) taagaggttttgcactaatggcacttaatataaggaagatagccgcataacgagcagtatatatcaaatacatttcaaAAAAAGCTGATTa > 1:2316884‑M1/79‑91 (MQ=255) tattattTAAAATTTTTAAAAGGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTtc < 1:3732915‑M1/91‑3 (MQ=255) tattTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTAt > 2:2766763/1‑91 (MQ=255) attTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTAtt < 1:1475424/91‑1 (MQ=255) attTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTAtt < 1:3540831/91‑1 (MQ=255) tttAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTc > 1:1056577/1‑91 (MQ=255) tAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGAAAAGAGAAAAAGCTGATTACTATTCat < 2:2454688/91‑1 (MQ=255) aaTTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCattat < 2:1105171/91‑1 (MQ=255) aaTTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCattat < 2:3427644/91‑1 (MQ=255) ttttAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTg < 2:1651927/91‑1 (MQ=255) tttAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGa > 1:1706692/1‑91 (MQ=255) tttAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGa > 1:1898883/1‑91 (MQ=255) aatggcacttaatataaggaagatagccgcataacgagcagtatatatcaaatacatttcaaAAAAAGCTGATTACTATTCATTATTTGAt > 1:1830044‑M1/63‑91 (MQ=255) tAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATa > 1:2615777/1‑91 (MQ=255) tAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATa > 2:1540015/1‑91 (MQ=255) tAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTCATa > 1:3006416/1‑91 (MQ=255) aaaaaGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAg > 1:2661549/1‑91 (MQ=255) aaaaGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTtctatcaaataatgaatagt < 1:2325030‑M1/91‑21 (MQ=255) aGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTtctatcaaataatgaatagtaat < 1:1679991‑M1/91‑24 (MQ=255) aGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTtctatcaaataatgaatagtaat < 1:1633911‑M1/91‑24 (MQ=255) ttttATCATAATATGTGAAATATAAACCTATGGCATAAAGTCCATAGGCAACGTGAAAAAGCTGATCACTAATCATTATTTGATAGAAATc > 2:2247455/4‑91 (MQ=25) gCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTtctatcaaataatgaatagtaatc < 1:895549‑M1/91‑25 (MQ=255) ttaatataaggaagatagccgcataacgagcagtatatatcaaatacatttcaaAAAAAGCTGATTACTATTCATTATTTGATAGAAATCa > 1:954564‑M1/55‑91 (MQ=255) cGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAaatca > 2:3746508‑M2/1‑86 (MQ=255) cGTATCATAATATGTGATATATAAACATAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAaatca < 2:2695612‑M2/91‑6 (MQ=255) gTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAaatcag < 2:3555758‑M2/91‑7 (MQ=255) gTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTANTNGATNGAaatcag < 1:907543‑M2/91‑7 (MQ=255) aatataaggaagatagccgcataacgagcagtatatatcaaatacatttcaaAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGc > 1:536657‑M1/53‑91 (MQ=255) tCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAaatcagctt < 1:61104‑M2/91‑10 (MQ=255) tCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAaatcagctt < 2:1270205‑M2/91‑10 (MQ=255) cATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAaatcagcttt < 2:3116731‑M2/91‑11 (MQ=255) taataTGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAaatcagcttttt > 1:748662‑M2/1‑79 (MQ=255) aataTGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCtttttt < 1:2956219/91‑1 (MQ=255) tatGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTg < 1:3635329/91‑1 (MQ=255) tgtgATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGaa > 1:2077804/1‑91 (MQ=255) tgtgATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGaa < 2:716945/91‑1 (MQ=255) gaaatatatAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGaaa < 2:1034743/88‑1 (MQ=255) tgATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAAt > 2:427020/1‑91 (MQ=255) atatatAAACCTGGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGt < 1:1306656/91‑1 (MQ=255) atatatAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGt < 1:2865874/91‑1 (MQ=255) tatataAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTa > 1:1268750/1‑91 (MQ=255) aaCCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGat < 2:1147829/91‑1 (MQ=255) cTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGatata < 2:2459291/91‑1 (MQ=255) gggCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAaatcagctttttcacattgcctaaggactttatg < 1:331595‑M2/91‑35 (MQ=255) gggCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATAc > 1:2245370/1‑91 (MQ=255) gggCATAAAGTCCTTAGGCAATGTGAAAAAGATGATTACTATTCATTATTTGTTAGAAATCAGCTTTTTTTGAAATGTATTTGATATATAc > 1:1716706/1‑91 (MQ=255) aaaGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCg > 1:983509/1‑91 (MQ=255) aaaGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCg > 2:372395/1‑91 (MQ=255) gTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTa < 1:1170939/91‑1 (MQ=255) gTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTa > 2:1827307/1‑91 (MQ=255) ccTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATg > 2:2629469/1‑91 (MQ=255) ccTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATg > 1:381451/1‑91 (MQ=255) ttAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCg > 1:1975203/1‑91 (MQ=255) ttAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCg < 2:200665/91‑1 (MQ=255) ggCAATGTGAAAGAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCt < 2:301962/91‑1 (MQ=255) gCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTa > 1:2814517/1‑91 (MQ=255) cAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTAt < 2:628502/91‑1 (MQ=255) cAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTAt > 2:40186/1‑91 (MQ=255) tgtgAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCtt > 2:3314576/1‑91 (MQ=255) gtgAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTc > 2:2866236/1‑91 (MQ=255) tgAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTcc < 1:2912174/91‑1 (MQ=255) gAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCt < 1:3278448/91‑1 (MQ=255) AAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCtt > 1:200271‑M1/1‑91 (MQ=255) taaagCTGATTtctatcaaataatgaatagtaatcagctttttcacattgcctaaggactttatgccctaggtttatatatcacatattat < 2:3845152‑M1/90‑81 (MQ=255) AAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTta < 2:1930775‑M1/91‑1 (MQ=255) AAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTta > 2:2940877‑M1/1‑91 (MQ=255) aaaGCTGATTtctatcaaataatgaatagtaatcagctttttcacattgcctaaggactttatgccctaggtttatatatcacatattatg > 2:2798712‑M1/1‑10 (MQ=255) AAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTtat < 1:2393018‑M1/91‑1 (MQ=255) aaGCTGATTtctatcaaataatgaatagtaatcagctttttcacattgcctaaggactttatgccctaggtttatatatcacatattatga < 1:2737527‑M1/91‑83 (MQ=255) aaGCTGATTtctatcaaataatgaatagtaatcagctttttcacattgcctaaggactttatgccctaggtttatatatcacatattatga < 2:2687084‑M1/91‑83 (MQ=255) aaGCTGATTtctatcaaataatgaatagtaatcagctttttcacattacctaaggactttatgccctaggtttatatatcacatattatga < 2:3064684‑M1/91‑83 (MQ=255) aaGCTGATTACTATTCATTATTTGATAGAaatcagctttttcacattgcctaaggactttatgccctaggtttatatatcacatattatga < 1:3138713‑M2/91‑63 (MQ=255) AAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTtata > 2:3708522‑M1/1‑91 (MQ=255) aGCTGATTtctatcaaataatgaatagtaatcagctttttcacattgcctaaggactttatgccctaggtttatatatcacatattatgat > 2:756295‑M1/1‑8 (MQ=255) gCTGATTtctatcaaataatgaatagtaatcagctttttcacattgcctaaggactttatgccctaggtttatatatcacatattatgata > 2:212024‑M1/1‑7 (MQ=255) gCTGATTACTATTCATTATTTGATAGAaatcagctttttcacattgcctaaggactttatgccctaggtttatatatcacatattctgata < 1:769289‑M2/91‑65 (MQ=255) gCTGATTACTATTCATTATTTGATAGAaatcagctttttcacattgcctaaggactttatgccctaggtttatatatcacatattatgata < 2:1571438‑M2/91‑65 (MQ=255) GCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATAtt > 2:1465933‑M1/1‑91 (MQ=255) GCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATAtt > 2:346011‑M1/1‑91 (MQ=255) GCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATAtt > 1:1781707‑M1/1‑91 (MQ=255) CTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGc < 1:1547309‑M1/75‑1 (MQ=255) tGATTtctatcaaataatgaatagtaatcagctttttcacattgcctaaggactttatgccctaggtttatatatcacatattatgatacg > 2:1440428‑M1/1‑5 (MQ=255) tGATTACTATTCATTATTTGATAGAaatcagcggtttcacattgcctaaggactttatgccctaggtttatatatcacatattatgagacg < 2:3085235‑M2/91‑67 (MQ=255) TGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTaa > 2:1345706‑M1/1‑91 (MQ=255) TGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTaa > 2:3864665‑M1/1‑91 (MQ=255) gATTtctatcaaataatgaatagtaatcagctttttcacattgcctaaggactttatgccctaggtttatatatcacatattatgatacgc > 2:1916145‑M1/1‑4 (MQ=255) gATTtctatcaaataatgaatagtaatcagctttttcacattgcctaaggactttatgccctaggtttatatatcacatattatgatacgc > 2:452668‑M1/1‑4 (MQ=255) GATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAg < 1:714840‑M1/91‑1 (MQ=255) GATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAg < 1:1397604‑M1/91‑1 (MQ=255) GATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAg > 2:2418516‑M1/1‑91 (MQ=255) aTTACTATTCATTATTTGATAGAaatcagctttttcacattgcctaaggactttatgccctaggtttatatatcacatattatgatacgct < 2:483048‑M2/91‑69 (MQ=255) ATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGt < 1:1151748‑M1/91‑1 (MQ=255) tttctatcaaataatgaatagtaatcagctttttcacattgcctaaggactttatgccctaggtttatatatcacatattatgatacgctt > 1:1607926‑M1/1‑2 (MQ=255) tttctatcaaataatgaatagtaatcagctttttcacattgcctaaggactttatgccctaggtttatatatcacatattatgatacgctt < 1:350175‑M1/91‑90 (MQ=255) tttctatcaaataatgaatagtaatcagctttttcacattgcctaaggactttatgccctaggtttatatatcacatattatgatacgctt < 2:3636272‑M1/91‑90 (MQ=255) TTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTg < 2:626917‑M1/91‑1 (MQ=255) ttctatcaaataatgaatagtaatcagctttttcacattgcctaaggactttatgccctaggtttatatatcacatattatgatacgcttt < 1:2132616‑M1/91‑91 (MQ=255) | ATTATTATTTAAAATTTTTAAAAAGCGTATCATAATATGTGATATATAAACCTAGGGCATAAAGTCCTTAGGCAATGTGAAAAAGCTGATTACTATTCATTATTTGATAGAAATCAGCTTTTTTTGAAATGTATTTGATATATACTGCTCGTTATGCGGCTATCTTCCTTATATTAAGTGC > USA300TCH1516_ALE/678763‑678943 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |