| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 710532 | 187 (0.980) | 32 (0.190) | 12/142 | NT | 15.3% | intergenic (+25/+36) | tarA/tagH_1 | N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH |
| ? | USA300TCH1516_ALE | = 710552 | 189 (1.120) | intergenic (+45/+16) | tarA/tagH_1 | N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH | |||||
GTAGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/710434‑710532‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaccgagAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTAT < USA300TCH1516_ALE/710552‑710464 GTAGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATA > 2:1827726/1‑91GTAGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATA > 1:1720417/1‑91GTAGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATA > 2:2125928/1‑91GTAGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATA < 2:2669070/91‑1 TAGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGTGAAATAATCATGATGACAAAAATAA > 2:1842991/1‑91 TAGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAA > 1:1491912/1‑91 aTAAAGAGTACTCGAATATTTATGTATAAAAAAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC < 2:139305/90‑1 TTAAAGAGTATTCCTATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC > 1:2431448/1‑91 TTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC > 1:2767308/1‑91 TTAAAGAGTATTCCAATATTTATGTATAAAATAGCAAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC < 2:2503644/91‑1 TTAAAGAGGATTCCAATATATATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC < 2:139359/91‑1 AAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGA < 2:2356754/91‑1 AAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGA < 2:3053390/91‑1 AAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGA < 2:592315/91‑1 AAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG < 2:407623/91‑1 TTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGG < 2:3767370/91‑1 TTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGA < 1:2747254/91‑1 TTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGA < 1:2746430/91‑1 ATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATT < 1:266963/91‑1 ATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATT < 1:257696/91‑1 ATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATT < 2:1138863/91‑1 GTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTC < 2:70439/91‑1 ATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCT < 1:610477/91‑1 AAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCG < 1:3531685/91‑1 AAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCG < 1:3771508/91‑1 AAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCG < 2:3685897/91‑1 AAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCG < 2:3686883/91‑1 AAAAAAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCG < 2:3686357/91‑1 AATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAGACCGAGAATCTCCATTTAAGGATTTCCTCGGT < 1:1998497/91‑1 AATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGT < 2:1533874/91‑1 AATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGT < 2:1534779/91‑1 AATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGT < 2:1985276/91‑1 AATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGT < 1:632764/91‑1 AATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGT < 1:3466128/91‑1 AATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGT < 1:1998255/91‑1 AATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGT < 1:1449391/91‑1 AATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGT < 1:1211387/91‑1 AATAGACAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGT < 2:3410448/91‑1 ATAGCCAAAACAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAACACCGAGAATCTCCATTTAAGGATTTCCTCGGTT < 2:879370/91‑1 ATAGCAAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCGTGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTT < 2:3402360/91‑1 aAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTT < 2:652395/90‑1 AGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTT < 1:664433/91‑1 CATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTT < 1:2052475/91‑1 CATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTT < 1:2050813/91‑1 CATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTT < 1:2050604/91‑1 ATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTC < 2:570227/91‑1 ATGATGACAAAAATAAAACATAGAATCTCCATTTAAGGATTTTCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTatac < 2:569427/91‑5 aatACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCT < 1:744848/88‑1 AAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCT < 2:275538/91‑1 AAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCT < 2:352063/91‑1 AAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTTCTTTTGCTt > 2:2135012/1‑90 AAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTA > 2:907796/1‑91 AAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTA > 2:2135052/1‑91 AACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTAT > 2:2528589/1‑91 ACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATT > 2:2313478/1‑91 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTTGCTATTT > 2:782618/1‑91 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTT > 2:2765288/1‑91 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTT > 2:1111902/1‑91 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTT < 1:542475/91‑1 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTT < 1:1108228/91‑1 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTT < 1:1106395/91‑1 CGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGACTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTT > 1:130047/1‑91 GAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTA < 1:678758/91‑1 GAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTA < 1:678342/91‑1 AGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTTCTTTTGCTATTTTAT > 2:868632/1‑91 AGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTAT < 2:1868563/91‑1 AGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTAT > 1:370878/1‑91 AGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTAT > 2:869987/1‑91 GTAGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/710434‑710532‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaccgagAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTAT < USA300TCH1516_ALE/710552‑710464 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |