| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 710532 | 187 (0.980) | 32 (0.190) | 12/142 | NT | 15.3% | intergenic (+25/+36) | tarA/tagH_1 | N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH |
| ? | USA300TCH1516_ALE | = 710552 | 189 (1.120) | intergenic (+45/+16) | tarA/tagH_1 | N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH | |||||
Only 100 of 273 total aligned reads displayed.
GTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCTTTTTAA > USA300TCH1516_ALE/710462‑710641 | gTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGAtt > 2:3859128/1‑91 (MQ=255) ataAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTct > 2:869987‑M2/1‑89 (MQ=255) taAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctc < 1:678758‑M2/91‑4 (MQ=255) aaaTAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcgg < 1:1106395‑M2/91‑6 (MQ=255) aaaTAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcgg < 1:542475‑M2/91‑6 (MQ=255) aaaTAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcgg > 2:2765288‑M2/1‑86 (MQ=255) aaaTAGCAAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcgg > 2:782618‑M2/1‑86 (MQ=255) aTAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcggtt > 2:2528589‑M2/1‑84 (MQ=255) tAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcggttt > 2:2135052‑M2/1‑83 (MQ=255) ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt > 2:712018/1‑91 (MQ=255) cAAAGCAAAAAAAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCCTAAATGGAGATTCTCGGTTTTTTc < 2:1457530/91‑1 (MQ=255) aaGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCgg < 1:368405/91‑1 (MQ=255) aaGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCgg < 1:883297/91‑1 (MQ=255) aGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCgtt > 2:1128942/1‑89 (MQ=255) aGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGt < 1:2108947/91‑1 (MQ=255) gaaaaaaGAAAAATAAAAAATGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtt < 1:913208/89‑1 (MQ=255) gCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtt > 2:671988/1‑91 (MQ=255) gCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtt < 1:1857902/91‑1 (MQ=255) gCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtt > 1:1420033/1‑91 (MQ=255) cAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGttt < 2:3663920/91‑1 (MQ=255) cAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGttt < 1:767778/91‑1 (MQ=255) cAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTCTTTCGGttt > 2:1260956/1‑91 (MQ=255) cAAAAAGAAAAATAAAAAAGGCGAAATAATCACGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGttt < 1:140056/91‑1 (MQ=255) aaaaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGttta < 2:1867180/91‑1 (MQ=255) aaaaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGttta < 1:3736197/91‑1 (MQ=255) aaGAAAAATAAAAAAGGCGAAATAATCATGATGACAACAATAAAACAGAGGAAATCCTTCAATGGAGATTCTCGGTTTTTTCGGtttattt > 1:3099563/1‑91 (MQ=255) aaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttattt < 2:3076818/91‑1 (MQ=255) aaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttattt > 1:3767177/1‑91 (MQ=255) aGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttattta > 1:181257/1‑91 (MQ=255) gAAAAATAAAAAAGGCGAAATAGTCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTCTCGGTTTATTtaa > 2:1690015/1‑91 (MQ=255) gAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcggttttatttttgtcatcat < 2:570227‑M2/91‑24 (MQ=255) gAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaa > 2:882494/1‑91 (MQ=255) aaaaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcggttttatttttgtcatcatg < 1:2052475‑M2/91‑25 (MQ=255) aaaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaata < 1:3055456/91‑1 (MQ=255) aaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAGACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAAc > 1:3280274/1‑91 (MQ=255) aaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAAc < 2:3814199/91‑1 (MQ=255) aaaaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAg < 2:286257/91‑1 (MQ=255) aGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCggg > 1:670291/1‑91 (MQ=255) cGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACt > 2:1599007/1‑91 (MQ=255) aaaTAGTCATGATGATAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGCCTCa < 2:2794127/91‑1 (MQ=255) aataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTc < 2:3033877/62‑1 (MQ=255) aataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCAt < 1:2639185/91‑1 (MQ=255) ataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATc < 1:641762/91‑1 (MQ=255) taatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCg < 1:40507/91‑1 (MQ=255) taatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCg < 1:964852/91‑1 (MQ=255) aatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGa < 2:1668048/91‑1 (MQ=255) atCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAg < 2:2992462/91‑1 (MQ=255) atgatgACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgttt > 1:232411/1‑91 (MQ=255) atgatgACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgttt < 2:3255206/91‑1 (MQ=255) atgaCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgtttgtt > 1:2499435/1‑91 (MQ=255) gaCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTc < 2:1204698/91‑1 (MQ=255) aCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGTAGCGGGACTCATCGAGTTTGTTTCt > 1:3606190/1‑91 (MQ=255) aCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCt < 1:3835408/91‑1 (MQ=255) aaaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTaa < 1:804214/91‑1 (MQ=255) aaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTaaa > 1:3380249/1‑91 (MQ=255) aaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTaaa < 1:2799125/91‑1 (MQ=255) aaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTaaa > 1:2964197/1‑91 (MQ=255) aaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTaaa > 2:478603/1‑91 (MQ=255) aaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAAtt < 1:3218226/91‑1 (MQ=255) aTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTc < 1:382484/91‑1 (MQ=255) aaaaCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCtt > 2:2303162/1‑91 (MQ=255) aaaCCGAGGAAATCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctt < 2:652395‑M2/91‑64 (MQ=255) aaaCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCttt > 2:2733449/1‑91 (MQ=255) aaCCGAGGAAATCCTTAAATGGAGATTctcggttttatttttgtcatcacgattatttcgccttttttatttttctttttgcttttgctat < 2:3402360‑M2/91‑65 (MQ=255) aaCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATCCtttt > 2:3574345/1‑91 (MQ=255) aCCGAGGAAATCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctatt < 1:1998255‑M2/91‑66 (MQ=255) aCCGAGGAAATCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctatt < 1:1211387‑M2/91‑66 (MQ=255) aCCGAGGAAATCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctatt < 1:3466128‑M2/91‑66 (MQ=255) aCCGAGGAAATCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctatt < 2:1985276‑M2/91‑66 (MQ=255) aCCGAGGAAATCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctatt < 2:1533874‑M2/91‑66 (MQ=255) aCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCttttt > 1:318872/1‑91 (MQ=255) aCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCttttt > 2:2650048/1‑91 (MQ=255) aCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCttttt > 1:2544899/1‑91 (MQ=255) ccGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTg > 1:2006213/1‑91 (MQ=255) cGAGGAAATCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctttttt < 2:3686357‑M2/91‑68 (MQ=255) cGAGGAAATCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctatttt < 1:3531685‑M2/91‑68 (MQ=255) cGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGt < 1:1656601/91‑1 (MQ=255) aGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTc > 1:2901172/1‑91 (MQ=255) ggAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCg < 1:1599007/91‑1 (MQ=255) ggAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCg > 2:2440761/1‑91 (MQ=255) gAAATCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctattttatac < 2:70439‑M2/91‑72 (MQ=255) aaaTCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGc < 1:2614264/91‑1 (MQ=255) aaaTCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGc < 1:2178776/91‑1 (MQ=255) aaaTCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGc > 1:613890/1‑91 (MQ=255) aaTCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctattttatacat < 2:1138863‑M2/91‑74 (MQ=255) aTCCTTAAATGGAGATTCTCGGTTTTTTTTGTTTTTTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCtt > 2:1104584/1‑91 (MQ=255) aTCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCtt < 2:1652992/91‑1 (MQ=255) ccTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctattttatacataaa < 2:3767370‑M2/91‑77 (MQ=255) ccTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTg > 1:1114603/1‑91 (MQ=255) cTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTAGCTAAATTCTATTTGTTAGGCTTTgg > 2:3365092/1‑91 (MQ=255) ttAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGa > 1:1513920/1‑91 (MQ=255) tAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGAt > 1:2139022/1‑91 (MQ=255) aaaTGGAGATTCTCGGTTTTTTCTGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGttt > 2:849388/1‑91 (MQ=255) aTGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTc > 2:1969220/1‑91 (MQ=255) tGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCt < 2:20874/91‑1 (MQ=255) ggAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCtt < 2:3496711/91‑1 (MQ=255) agaTTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCtttt > 1:2243642/1‑69 (MQ=255) agaTTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCtttt < 1:3472548/91‑1 (MQ=255) gaTTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCttttt > 1:2670778/1‑91 (MQ=255) ttCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCTTTTTaa > 1:1337369/1‑91 (MQ=255) | GTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCTTTTTAA > USA300TCH1516_ALE/710462‑710641 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |