| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 712543 | 147 (0.770) | 23 (0.130) | 12/148 | NT | 13.7% | intergenic (+22/‑77) | tagG/tarB | Teichoic acid translocation permease protein TagG/Teichoic acid glycerol‑phosphate primase |
| ? | USA300TCH1516_ALE | = 712566 | 153 (0.870) | intergenic (+45/‑54) | tagG/tarB | Teichoic acid translocation permease protein TagG/Teichoic acid glycerol‑phosphate primase | |||||
TTGTTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/712448‑712543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccccACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAAGTA < USA300TCH1516_ALE/712566‑712477 TTGTTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAA > 2:113281/1‑91TTGTTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAA > 1:2654987/1‑91 TGTTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATGTATTTATATGACGAAA > 2:2982980/1‑91 TGTTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATCTATTTATATGACGAAA > 2:2983026/1‑91 TGTTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAA > 2:943706/1‑91 TGTTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAA < 1:1175640/91‑1 GTTTCCATTTTCTTAGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCCGACTTCTTGTAATATATTTATATGACGAAAC < 1:3498967/91‑1 GTTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAAC < 2:993633/91‑1 GTTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAAC < 2:899775/91‑1 GTTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAAC > 1:876837/1‑91 TGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCC > 1:2472017/1‑91 TGCCATTTTCTTTGCAATTGGTGCATACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCC > 1:1042962/1‑91 GCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCC < 1:1003175/91‑1 GCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCC < 2:813534/91‑1 GCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCC > 2:3376990/1‑91 GCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCC < 1:1632683/91‑1 GCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCC < 2:2499550/91‑1 GCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCC < 2:2200832/91‑1 GCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTAT < 2:1287521/91‑1 TGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATG < 2:1938743/91‑1 TGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATG < 2:2371452/91‑1 GTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGT < 2:75572/91‑1 GTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGT < 2:75564/91‑1 GTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGT < 1:2083418/91‑1 CGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAG < 2:1010928/91‑1 CGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAG < 2:424260/91‑1 GTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGC < 1:3798852/91‑1 GTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGC < 1:318818/91‑1 GTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGC < 2:2445711/91‑1 TACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGCG < 1:3332034/91‑1 TACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGCG < 1:2215546/91‑1 TACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGCG < 1:1124109/91‑1 TACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGCG < 1:2215704/91‑1 TACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGCG < 2:2742697/91‑1 ACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGCGG < 1:1454721/91‑1 ACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGCGG < 2:2172022/91‑1 CTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGCGGG < 1:2038978/91‑1 TTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGCGGGG < 2:2474265/91‑1 ACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGCGGGGTT < 1:912707/91‑1 TAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAA < 1:837011/91‑1 ATTTATATGACGAAACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCT < 2:3333304/91‑1 AACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGT > 2:2200967/1‑91 AACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGT > 1:1385930/1‑91 ACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTA < 1:2292986/91‑1 ACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTA < 2:1123261/91‑1 ACCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTA > 1:1776703/1‑91 CCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAA > 1:237748/1‑91 CCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAA > 1:237654/1‑91 CCCCACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAA > 1:1655628/1‑91 CCCCACTTCCATTTATTAATGGTTAGCGGGGATTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAA > 2:1169585/1‑91 CACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAAGTA < 1:2144630/91‑1 CACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAAGTA < 1:2144704/91‑1 TTGTTGCCATTTTCTTTGCAATTGGTGCGTACTTACACATGAAATATAGAGATCAATTTGCAGACTTCTTGTAATATATTTATATGACGAAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/712448‑712543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccccACTTCCATTTATTAATGGTTAGCGGGGTTTCGTCATATAAATATATTACAAGAAGTCTGCAAATTGATCTCTATATTTCATGTGTAAGTA < USA300TCH1516_ALE/712566‑712477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |