| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 715303 = | 139 (0.730) | 16 (0.100) | 8/132 | NT | 11.3% | intergenic (+61/+56) | tarD/dacA | Glycerol‑3‑phosphate cytidylyltransferase/D‑alanyl‑D‑alanine carboxypeptidase DacA |
| ? | USA300TCH1516_ALE | 715350 = | 138 (0.880) | intergenic (+108/+9) | tarD/dacA | Glycerol‑3‑phosphate cytidylyltransferase/D‑alanyl‑D‑alanine carboxypeptidase DacA | |||||
CTTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/715406‑715303‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAA > USA300TCH1516_ALE/715350‑715438 CTTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAA > 1:2746971/1‑91 TTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAA > 1:2497165/1‑91 TATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAAC < 2:3284651/91‑1 TATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAAC < 2:192983/91‑1 TATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAAC < 1:3471477/91‑1 TATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAAC < 2:193168/91‑1 TATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAAC < 1:1893464/91‑1 ATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAATAACGGACAAGTTGCACATTATAAAGCTGCGAAACT < 2:249164/91‑1 ATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACT > 1:925490/1‑91 ATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACT < 2:332386/91‑1 ATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACT < 1:3371876/91‑1 ATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACT < 2:248764/91‑1 TTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTT < 1:506995/91‑1 caTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTG < 1:3339629/89‑1 caTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTG < 1:3339703/89‑1 TGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTG > 2:2312732/1‑91 TGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTG > 1:175970/1‑91 gtaCATATGATAATCAATCGTTTATTTAAAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGT < 2:2799755/88‑1 GTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGT < 2:612209/91‑1 GTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGT < 1:930684/91‑1 GTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGT < 1:930685/91‑1 GTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGT < 1:1781657/91‑1 GTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGT < 2:2799922/91‑1 TTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTC < 1:3817953/91‑1 TCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCC < 1:2542337/91‑1 TCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCC < 1:728870/91‑1 TCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCC < 2:2751737/91‑1 TCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCC > 2:2935620/1‑91 TCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCC > 1:3157309/1‑91 TATGATAATCAATCGTTTATTTAGAAAAATAAAATAAAATATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTT > 2:2308603/1‑91 TATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTT > 2:947649/1‑91 ATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTT > 2:1541683/1‑91 ATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTT > 1:3100707/1‑91 TGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTT > 1:3139804/1‑91 TGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTT < 2:1816665/91‑1 TGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTT < 2:3769469/91‑1 TGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTT > 1:3139752/1‑91 TGATAATCAATAGATTATTAAAAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTT < 2:3444292/91‑1 AAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAA > 2:1338927/1‑91 AAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAA > 1:1953594/1‑91 AGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAAT > 1:1370357/1‑91 GTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATA > 1:434895/1‑91 GTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATA > 2:3338154/1‑91 TTGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAA > 2:3251701/1‑91 TGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAG > 1:1994723/1‑91 TGCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAG > 1:3287833/1‑91 GCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGT > 2:905458/1‑91 GCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGT > 2:3408289/1‑91 GCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGT > 1:536894/1‑91 GCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGT > 1:2963444/1‑91 GCACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGT > 1:3724773/1‑91 GCACATTATAAAGCTGCGAAACTTGTCCGATTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGT > 2:3408174/1‑91 ACATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGC > 2:1390919/1‑91 ATTATAAAGCTGCGAAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTA > 1:712191/1‑91 ACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCA > 1:1123245/1‑91 ACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCA > 1:1123503/1‑91 CTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCAT < 1:2219124/91‑1 CTTGTCCGTTTCTAGTATGTCTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATACGTGCTCATCCAGCGACACGGCAT > 1:1714707/1‑91 TTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATG < 2:1233754/91‑1 TTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATG < 1:219840/91‑1 TTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATG < 1:1157587/91‑1 TTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATG < 1:1119247/91‑1 TGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGT < 1:1961515/91‑1 TGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGT > 2:2712133/1‑91 TGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGT > 2:2455924/1‑91 TGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGT < 1:851214/91‑1 TGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGT > 1:2457279/1‑91 TGTCCGTTTTGAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGT < 2:2479002/91‑1 GTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTA > 2:726182/1‑91 TCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTAC > 1:1781939/1‑91 TCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTAC < 1:2927241/91‑1 TCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTAC < 1:85791/91‑1 TCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTAC > 2:1068579/1‑91 TCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTAC < 2:2720560/91‑1 CGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCA > 1:104280/1‑91 CGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCA < 2:871413/91‑1 CGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCA > 1:2919610/1‑91 CGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCA < 1:631936/91‑1 CGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCA < 1:1251561/91‑1 TTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACC > 2:24378/1‑91 TTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCATCGACAATGCATGTACCACCA > 2:3771350/1‑91 TTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCA > 1:3731380/1‑91 TTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCA > 1:2232199/1‑91 TTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGCTTATCATATGAACAATAAGTTCTAATCCAGCGACAAGCCATGTACCACCAc > 2:3845281/1‑90 TTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAc > 2:3845324/1‑90 TTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAA < 1:2726730/91‑1 TTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAA < 2:2176823/91‑1 TTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAA > 1:1108402/1‑91 TTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAA < 2:2176522/91‑1 CTTATTGTTCATATGATAATCAATCGTTTATTTAGAAAAAGAAAATAAAACATACTAAAAACGGACAAGTTGCACATTATAAAGCTGCGAAACTTGTCCGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/715406‑715303‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAA > USA300TCH1516_ALE/715350‑715438 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |