BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	715303 =	139 (0.730)	16 (0.100)	8/132	NT	11.3%	intergenic (+61/+56)	tarD/dacA	Glycerol‑3‑phosphate cytidylyltransferase/D‑alanyl‑D‑alanine carboxypeptidase DacA
*	?	USA300TCH1516_ALE	715350 =	138 (0.880)	16 (0.100)	8/132	NT	11.3%	intergenic (+108/+9)	tarD/dacA	Glycerol‑3‑phosphate cytidylyltransferase/D‑alanyl‑D‑alanine carboxypeptidase DacA

Only 100 of 255 total aligned reads displayed.

ATACTAAACGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAATG  >  USA300TCH1516_ALE/715260‑715440

aTACTAAACGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGttttt                                                                                            <  2:1541406/91‑1 (MQ=255)

aTACTAAACGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGttttt                                                                                            <  1:135625/91‑1 (MQ=255)

 tACTAAACGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTa                                                                                           <  2:842801/91‑1 (MQ=255)

 tACTAAACGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTa                                                                                           <  1:1721205/91‑1 (MQ=255)

   cTAAACGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGt                                                                                         >  2:478831/1‑91 (MQ=255)

    tAAACGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCGTTATAATGTGCAACTTGTCCGTTTTTAGTa                                                                                        <  2:3018739/91‑1 (MQ=255)

     aaaCGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTAt                                                                                       <  2:1960727/91‑1 (MQ=255)

      aaCGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATg                                                                                      <  2:1253957/91‑1 (MQ=255)

       aCGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGt                                                                                     <  1:2021887/91‑1 (MQ=255)

       aCGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGt                                                                                     <  2:2770510/91‑1 (MQ=255)

        cGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGtt                                                                                    >  1:3570574/1‑91 (MQ=255)

         gATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGttt                                                                                   <  1:3770633/91‑1 (MQ=255)

          aTAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGtttt                                                                                  <  1:523541/91‑1 (MQ=255)

           tAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTa                                                                                 <  2:2886325/91‑1 (MQ=255)

            aaaTTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAt                                                                                >  1:3625797/1‑91 (MQ=255)

               ttAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAtttt                                                                             >  2:2268402/1‑91 (MQ=255)

               ttAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAtttt                                                                             <  1:387681/91‑1 (MQ=255)

               ttAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAtttt                                                                             >  1:3502665/1‑91 (MQ=255)

                tAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAttttc                                                                            >  1:3136210/1‑91 (MQ=255)

                 aaCTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAttttct                                                                           <  1:2397942/91‑1 (MQ=255)

                  aCTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAttttctt                                                                          <  2:3085842/91‑1 (MQ=255)

                  aCTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTAGAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAttttctt                                                                          <  2:3190248/91‑1 (MQ=255)

                   cTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAttttcttt                                                                         >  2:1088803/1‑91 (MQ=255)

                      aGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAttttctttttc                                                                      <  1:1088803/91‑1 (MQ=255)

                      aGGTTACTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAttttcttcttc                                                                      >  1:3023566/1‑91 (MQ=255)

                        gTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTAttttctttttc                                                                      >  1:1445140/1‑89 (MQ=255)

                         ttattaTAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCtaa                                                                   <  1:1000461/91‑1 (MQ=255)

                             tataAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCtaaataa                                                               >  2:2580458/1‑91 (MQ=255)

                             tataAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCtaaataa                                                               <  2:3751136/91‑1 (MQ=255)

                             tataAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCtaaataa                                                               <  2:2776319/91‑1 (MQ=255)

                               taaaataaaTATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAAc                                                             <  1:1965169/91‑1 (MQ=255)

                               taaaataaaTATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAAc                                                             >  1:3425137/1‑91 (MQ=255)

                                aaaataaaTATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACg                                                            <  1:633378/91‑1 (MQ=255)

                                  aataaataTAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACgat                                                          >  1:2753768/1‑91 (MQ=255)

                                    taaataTAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACgattg                                                        <  2:633942/91‑1 (MQ=255)

                                     aaataTAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACgattga                                                       <  1:1998524/91‑1 (MQ=255)

                                      aataTAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACgattgat                                                      >  2:175970/1‑91 (MQ=255)

                                      aataTAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACgattgat                                                      <  2:347992/91‑1 (MQ=255)

                                      aataTAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACgattgat                                                      >  1:2126028/1‑91 (MQ=255)

                                       atatAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACgattgatt                                                     >  1:2462224/1‑91 (MQ=255)

                                       atatAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACgattaatt                                                     >  2:262967/1‑91 (MQ=255)

                                        tataAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTa                                                    >  1:3277257/1‑91 (MQ=255)

                                        tataAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTa                                                    >  2:790767/1‑91 (MQ=255)

                                        tataAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTa                                                    <  1:3030779/91‑1 (MQ=255)

                                          taAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATc                                                  >  2:2163347/1‑91 (MQ=255)

                                          taAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATc                                                  <  1:2827864/91‑1 (MQ=255)

                                            AAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCat                                                >  1:3100707‑M1/1‑91 (MQ=255)

                                                GGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGa                                            <  1:2542337‑M1/91‑1 (MQ=255)

                                                GGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGa                                            <  1:728870‑M1/91‑1 (MQ=255)

                                                GGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGa                                            <  2:2751737‑M1/91‑1 (MQ=255)

                                                GGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGa                                            >  1:3157309‑M1/1‑91 (MQ=255)

                                                 GACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGaa                                           <  1:3817953‑M1/91‑1 (MQ=255)

                                                  ACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAAc                                          <  1:1781657‑M1/91‑1 (MQ=255)

                                                   CAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATAtgaatg                                         <  1:3339629‑M1/91‑3 (MQ=255)

                                                   CAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACa                                         >  2:2312732‑M1/1‑91 (MQ=255)

                                                    aagttgcacattataaagctgcgaaacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACaa                                        >  1:1953594‑M2/39‑91 (MQ=255)

                                                    aagttgcacattataaagctgcgaaacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACaa                                        >  2:1338927‑M2/39‑91 (MQ=255)

                                                     AGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAAt                                       >  1:925490‑M1/1‑91 (MQ=255)

                                                     AGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAAt                                       <  1:3371876‑M1/91‑1 (MQ=255)

                                                     AGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTATTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAAt                                       <  2:249164‑M1/91‑1 (MQ=255)

                                                      gttgcacattataaagctgcgaaacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATa                                      >  1:434895‑M2/37‑91 (MQ=255)

                                                      gttgcacattataaagctgcgaaacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATa                                      >  2:3338154‑M2/37‑91 (MQ=255)

                                                      GTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATa                                      <  2:193168‑M1/91‑1 (MQ=255)

                                                      GTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATa                                      <  2:3284651‑M1/91‑1 (MQ=255)

                                                         tCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGt                                   >  2:644377/1‑91 (MQ=255)

                                                         gcacattataaagctgcgaaacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGt                                   >  2:905458‑M2/34‑91 (MQ=255)

                                                         gcacattataaagctgcgaaacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGt                                   >  2:3408289‑M2/34‑91 (MQ=255)

                                                         gcacattataaagctgcgaaacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGt                                   >  1:3724773‑M2/34‑91 (MQ=255)

                                                          cGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTg                                  >  2:2421949/1‑91 (MQ=255)

                                                           acattataaagctgcgaaacttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGc                                 >  2:1390919‑M2/32‑91 (MQ=255)

                                                            cAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCt                                <  1:816083/91‑1 (MQ=255)

                                                              gCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTaa                              >  1:1264224/1‑91 (MQ=255)

                                                               cTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAAt                             >  1:2596219/1‑91 (MQ=255)

                                                                tttATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATc                            <  2:748309/91‑1 (MQ=255)

                                                                tttATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATc                            >  2:280024/1‑91 (MQ=255)

                                                                  tataATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCa                          >  1:1851557/1‑91 (MQ=255)

                                                                  tataATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCa                          <  1:2412896/91‑1 (MQ=255)

                                                                   ataATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAg                         <  2:930685/91‑1 (MQ=255)

                                                                   ataATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAg                         <  2:611424/91‑1 (MQ=255)

                                                                      aTGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGa                      >  2:1702548/1‑91 (MQ=255)

                                                                      aTGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGa                      >  2:3246095/1‑91 (MQ=255)

                                                                      aTGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGa                      <  1:3539931/91‑1 (MQ=255)

                                                                          gCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAg                  <  2:3817953/91‑1 (MQ=255)

                                                                          gCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAg                  <  1:507537/91‑1 (MQ=255)

                                                                          gCAACTTGTCCGCTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGTACAATAAGTGCTAATCCAGCGACAAg                  <  2:3221034/91‑1 (MQ=255)

                                                                           cAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAgg                 <  1:936695/91‑1 (MQ=255)

                                                                             acttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCa               >  1:1123245‑M2/14‑91 (MQ=255)

                                                                               ttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATg             <  1:219840‑M2/80‑1 (MQ=255)

                                                                               ttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATg             <  1:1157587‑M2/80‑1 (MQ=255)

                                                                               ttgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATg             <  2:1233754‑M2/80‑1 (MQ=255)

                                                                                tgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGt            >  2:2712133‑M2/11‑91 (MQ=255)

                                                                                tgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGt            >  2:2455924‑M2/11‑91 (MQ=255)

                                                                                tgtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGt            <  1:851214‑M2/81‑1 (MQ=255)

                                                                                 gtccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTa           >  2:726182‑M2/10‑91 (MQ=255)

                                                                                  tccgttttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTac          <  1:2927241‑M2/83‑1 (MQ=255)

                                                                                       tttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCATCGACAATGCATGTAccacca     >  2:3771350‑M2/4‑91 (MQ=255)

                                                                                        ttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTaccaccac    >  2:3845324‑M2/3‑90 (MQ=255)

                                                                                        ttTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCaa    <  2:2176823‑M2/89‑1 (MQ=255)

                                                                                          tAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAATg  >  1:2860711/1‑91 (MQ=255)

                                                                                          tAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAATg  <  1:1523843/91‑1 (MQ=255)

ATACTAAACGATAAATTAACTTAGGTTATTATAAAATAAATATAAAACGGACAAGTTTCGCAGCTTTATAATGTGCAACTTGTCCGTTTTTAGTATGTTTTATTTTCTTTTTCTAAATAAACGATTGATTATCATATGAACAATAAGTGCTAATCCAGCGACAAGGCATGTACCACCAATG  >  USA300TCH1516_ALE/715260‑715440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.