| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 724910 | 169 (0.890) | 16 (0.100) | 11/140 | NT | 9.4% | intergenic (+30/‑204) | feuC_1/dhaK | Iron‑uptake system permease protein FeuC/PTS‑dependent dihydroxyacetone kinase, dihydroxyacetone‑binding subunit DhaK |
| ? | USA300TCH1516_ALE | = 724929 | 160 (0.960) | intergenic (+49/‑185) | feuC_1/dhaK | Iron‑uptake system permease protein FeuC/PTS‑dependent dihydroxyacetone kinase, dihydroxyacetone‑binding subunit DhaK | |||||
AGGTATTGTCGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/724811‑724910‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctatgaaaAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGAAATACG < USA300TCH1516_ALE/724929‑724840 AGGTATTGTCGTAGCAATTATTGGTGCACCGTATTTCTCATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATT > 2:1852782/1‑91 GGTATTGTCGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTG > 2:1612417/1‑91 GGTATTGTCGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTG < 1:3632228/91‑1 GTATTGTCGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGC < 1:451056/91‑1 ATTGTCGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTA > 2:2485159/1‑91 ATTGTAGTAGCAATTATTGGTGCACTGTATTTCTTATATGTAATGTACAAAACTAAAAATGTATAGTGTCAATGGACACAACTTATTGCTA < 1:3603389/91‑1 TTGTCGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTAT > 1:889984/1‑91 TTGTCGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTAT > 1:3032321/1‑91 TGTCGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATG < 1:2667720/91‑1 TGTCGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATG > 1:3157506/1‑91 GTCGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGA < 2:2004761/91‑1 CGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAA < 2:945159/91‑1 CGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAA < 2:3286259/91‑1 CGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAA > 1:796212/1‑91 CGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAA < 1:1395768/91‑1 CGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAA > 1:1419902/1‑91 CGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAA > 1:1420239/1‑91 GTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAA < 1:1281364/91‑1 ACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGC < 1:692860/91‑1 ACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGC < 2:3663566/91‑1 ACCGTATTTCTTATATTTAATGTAAAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGC < 2:2420403/91‑1 CCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGCC < 1:1526519/91‑1 GTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGCCTT < 2:706639/91‑1 TATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGCCTTT < 2:2418405/91‑1 TTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGCCTTTCA < 2:2345884/91‑1 TTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGGCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGCCTTTCAT < 2:172468/91‑1 CTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGCCTTTCATAG < 1:1198010/91‑1 CTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGCCTTTCATAG < 2:3872788/91‑1 CTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGCCATTCATAG < 2:3220083/91‑1 TTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGCCTTTCATAGC < 2:1132445/91‑1 TTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTGATTGCTATGAAAAGCCTTATAATAAAGTGCCTTTCATAGC < 2:3189028/91‑1 TTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAG < 1:2279820/91‑1 AAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACA < 2:1878020/91‑1 TGCTATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATA < 2:399602/91‑1 TGCTATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATA < 1:107586/91‑1 TGCTATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATA > 1:625736/1‑91 TGCTATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATA > 1:625655/1‑91 CTATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTATCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAG > 2:3482738/1‑91 TATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGA < 1:276313/91‑1 TATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGA < 1:2520156/91‑1 TATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGA < 2:480757/91‑1 TATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACAGTTTTCGTTTTGTACATTAAATATAAGA < 2:1393842/91‑1 ATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGAA < 2:1389501/91‑1 ATGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGAA < 2:378915/91‑1 TGAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGAAA > 2:1313358/1‑91 GAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCTTTTTTTTCATTAAATATAAGAAAT > 2:2671404/1‑91 GAAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGAAAT < 1:859488/91‑1 AAAAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGAAATA > 2:3573146/1‑91 AAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGAAATACG < 2:2171655/91‑1 AAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGAAATACG < 2:581472/91‑1 AAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGAAATACG < 2:583265/91‑1 AAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGAAATACG < 2:1757144/91‑1 AGGTATTGTCGTAGCAATTATTGGTGCACCGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/724811‑724910‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctatgaaaAGCCTTATAATAAAGTGCCTTTCATAGCAATAAGTTGTGTCCATTGACACTATACATTTTTCGTTTTGTACATTAAATATAAGAAATACG < USA300TCH1516_ALE/724929‑724840 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |