BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 724910	169 (0.890)	16 (0.100)	11/140	NT	9.4%	intergenic (+30/‑204)	feuC_1/dhaK	Iron‑uptake system permease protein FeuC/PTS‑dependent dihydroxyacetone kinase, dihydroxyacetone‑binding subunit DhaK
*	?	USA300TCH1516_ALE	= 724929	160 (0.960)	16 (0.100)	11/140	NT	9.4%	intergenic (+49/‑185)	feuC_1/dhaK	Iron‑uptake system permease protein FeuC/PTS‑dependent dihydroxyacetone kinase, dihydroxyacetone‑binding subunit DhaK

Only 100 of 226 total aligned reads displayed.

CGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATCAAAA  >  USA300TCH1516_ALE/724840‑725019

cGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTt                                                                                            <  2:583265‑M2/91‑2 (MQ=255)

   aTTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttc                                                                                         <  1:859488‑M2/91‑5 (MQ=255)

    tttCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttca                                                                                        >  2:1313358‑M2/1‑86 (MQ=255)

      tCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcata                                                                                      <  1:2520156‑M2/91‑8 (MQ=255)

       cTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGATACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcatag                                                                                     >  2:3482738‑M2/1‑83 (MQ=255)

         tataTTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcatagca                                                                                   <  1:107586‑M2/91‑11 (MQ=255)

         tataTTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcatagca                                                                                   >  1:625655‑M2/1‑81 (MQ=255)

         tataTTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcatagca                                                                                   <  2:399602‑M2/91‑11 (MQ=255)

          atatTTAATGTACAAGACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑t                                                                                 <  2:1903007/91‑1 (MQ=255)

          atatTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑t                                                                                 <  2:1768660/91‑1 (MQ=255)

           tatTTAATGTAAAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑tt                                                                                <  2:649862/91‑1 (MQ=255)

            atTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑ttt                                                                               >  2:1042332/1‑91 (MQ=255)

            atTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑ttt                                                                               <  1:696286/91‑1 (MQ=255)

              ttAATGTACAAAACGAAAAAGGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑ttttt                                                                             <  1:3722024/91‑1 (MQ=255)

               tAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑tttttt                                                                            <  2:3257483/91‑1 (MQ=255)

               tAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑tttttt                                                                            <  2:3798579/91‑1 (MQ=255)

                aaTGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTttta                                                                           <  1:659670/91‑1 (MQ=255)

                  tGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTtttatt                                                                         >  1:2856546/1‑91 (MQ=255)

                     aCAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGTAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTaa                                                                      <  2:3000818/91‑1 (MQ=255)

                      cAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCATTTTTTTATTTaa                                                                      >  2:2919058/1‑91 (MQ=255)

                      cAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAAt                                                                     >  2:175284/1‑91 (MQ=255)

                      aaaaaCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAAt                                                                     <  2:1290121/90‑1 (MQ=255)

                        aaaCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGa                                                                   <  1:793356/91‑1 (MQ=255)

                         aaCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAg                                                                  >  1:3025210/1‑91 (MQ=255)

                         aaCGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGACACTTTATTATAAGGCTTTTCATAGCA‑tttt                                                                              >  1:3884867/1‑79 (MQ=255)

                              aaaaTGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACt                                                             >  1:2729244/1‑91 (MQ=255)

                                aaTGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCa                                                           >  1:1502544/1‑91 (MQ=255)

                                  tGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAg                                                         >  2:1523873/1‑91 (MQ=255)

                                    tataGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGAc                                                       >  1:443735/1‑91 (MQ=255)

                                     ataGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACt                                                      <  1:1645287/91‑1 (MQ=255)

                                       aGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACtat                                                    <  2:3174120/91‑1 (MQ=255)

                                       aGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACtat                                                    <  1:1417759/91‑1 (MQ=255)

                                        gtgtCCATTGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACtatt                                                   >  1:1150994/1‑91 (MQ=255)

                                        gtgtCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACtatt                                                   <  2:204525/91‑1 (MQ=255)

                                        gtgtCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACtatt                                                   >  1:539565/1‑91 (MQ=255)

                                        gtgtCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACtatt                                                   >  1:1325866/1‑91 (MQ=255)

                                        gtgtCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACtatt                                                   <  1:3830050/91‑1 (MQ=255)

                                        gtgtCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACtatt                                                   >  1:2540345/1‑91 (MQ=255)

                                        gtgtCAATGGACACAACTTATTGCTATGAAAGGCACTATATTATAAGGCTTCTCATAGCA‑TTTTTGATTTAATGAGCCACTCAAGCCtatt                                                   >  1:3612897/1‑91 (MQ=255)

                                         tgtCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACtattt                                                  >  2:3434555/1‑91 (MQ=255)

                                             aaTGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACtatt                                                   <  1:2509985/86‑1 (MQ=255)

                                              aTGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTAtttt                                             <  2:3543527/91‑1 (MQ=255)

                                              aTGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTGCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTAtttt                                             >  1:3089126/1‑91 (MQ=255)

                                               tGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGcc                                                                >  2:2477757/1‑71 (MQ=255)

                                               tGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTAttttt                                            <  2:1871465/91‑1 (MQ=255)

                                                 gACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTc                                          <  1:194838/91‑1 (MQ=255)

                                                  acacAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCa                                         >  2:210012/1‑91 (MQ=255)

                                                  acacAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCa                                         >  1:2590540/1‑91 (MQ=255)

                                                  acacAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCa                                         >  1:1971252/1‑91 (MQ=255)

                                                  acacAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCa                                         >  2:1482601/1‑91 (MQ=255)

                                                  acacAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCa                                         <  1:1557721/91‑1 (MQ=255)

                                                  acacAACTTATTGCTATGAAAGGCACTTTATTATAAGACTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCa                                         <  1:3570928/91‑1 (MQ=255)

                                                   cacaACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCaa                                        <  2:389655/91‑1 (MQ=255)

                                                    acaACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCaat                                       >  2:1131764/1‑91 (MQ=255)

                                                    acaACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCaat                                       >  2:471959/1‑91 (MQ=255)

                                                    acaACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TGTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCaat                                       <  1:3366842/91‑1 (MQ=255)

                                                     caACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCaata                                      >  1:1237123/1‑91 (MQ=255)

                                                      aaCTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCaataa                                     >  2:688958/1‑91 (MQ=255)

                                                        cTTATTGCTATGAAAGGCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaa                                    <  1:2279820‑M2/91‑58 (MQ=255)

                                                        cTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATg                                   <  1:1852782/91‑1 (MQ=255)

                                                        cTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTCAATGAGCCACTCAAGACTATTTATTTTTTCAATAATg                                   <  1:3260118/91‑1 (MQ=255)

                                                         ttATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGa                                  >  1:2392976/1‑91 (MQ=255)

                                                          tATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGaa                                 <  2:1654944/91‑1 (MQ=255)

                                                           aTTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAAc                                >  2:1351724/1‑91 (MQ=255)

                                                           aTTGCTATGAAAGGCACTTTATTATAAGGCTTTGCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAAc                                <  2:319326/91‑1 (MQ=255)

                                                            ttGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAAcc                               >  1:2407769/1‑91 (MQ=255)

                                                            ttGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAAcc                               >  2:562933/1‑91 (MQ=255)

                                                             tGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCa                              <  1:1642413/91‑1 (MQ=255)

                                                             tGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCa                              >  2:3758875/1‑91 (MQ=255)

                                                               cTATGAAAGGCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataag                             <  2:3872788‑M2/91‑65 (MQ=255)

                                                               cTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCAtt                            >  1:3644646/1‑91 (MQ=255)

                                                               cTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCAtt                            >  1:460694/1‑91 (MQ=255)

                                                               cTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCAtt                            >  2:2702386/1‑91 (MQ=255)

                                                               cTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCAtt                            >  2:2632957/1‑91 (MQ=255)

                                                               cTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCAtt                            >  1:2796888/1‑91 (MQ=255)

                                                                 aTGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTaa                          <  1:3695564/91‑1 (MQ=255)

                                                                 aTGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTaa                          >  2:3695564/1‑91 (MQ=255)

                                                                  tGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAg                         >  2:1421806/1‑91 (MQ=255)

                                                                    aaaGGCACTTTATTATAAGGCTtttcatagcaataagttgtgtccattgacactatacatttttcgttttgtacattaaatataagaaata                        <  2:2418405‑M2/91‑70 (MQ=255)

                                                                    aaaGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGtt                       <  2:568317/91‑1 (MQ=255)

                                                                     aaGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTa                      <  1:3109615/91‑1 (MQ=255)

                                                                     aaGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTa                      >  1:3459519/1‑91 (MQ=255)

                                                                       ggCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATc                    <  2:1784175/91‑1 (MQ=255)

                                                                         cACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCaa                  >  2:2739882/1‑91 (MQ=255)

                                                                            tttATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAagag               <  2:454604/91‑1 (MQ=255)

                                                                            tttATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAagag               >  2:1017645/1‑91 (MQ=255)

                                                                             ttattaTAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAgg              >  2:2781671/1‑91 (MQ=255)

                                                                                ttatAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATTTTTAACTATTAAGTTATCAAGAGGATc           >  2:2523789/1‑91 (MQ=255)

                                                                                 tataAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCt          >  2:237983/1‑91 (MQ=255)

                                                                                  ataAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCtt         >  1:1682341/1‑91 (MQ=255)

                                                                                   taAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTa        >  2:3556311/1‑91 (MQ=255)

                                                                                   taAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAAGATCATa        <  2:933733/91‑1 (MQ=255)

                                                                                    aaGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTAt       <  1:1747661/91‑1 (MQ=255)

                                                                                    aaGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGAACatat       <  2:2224946/91‑1 (MQ=255)

                                                                                     aGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATc      >  2:755077/1‑91 (MQ=255)

                                                                                      ggCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATCa     >  1:2414226/1‑91 (MQ=255)

                                                                                       gCTTTTCATAGCA‑TTTTTTATTTACTGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCATATaaa    <  2:3596484/91‑1 (MQ=255)

                                                                                       gCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATCaa    <  1:2060941/91‑1 (MQ=255)

                                                                                       gCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATCaa    <  1:1107468/91‑1 (MQ=255)

                                                                                        cTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCATTAATGAACCATTAAGTTATCAAGAGGATTTTATCaaa   >  2:2355639/1‑91 (MQ=255)

CGTATTTCTTATATTTAATGTACAAAACGAAAAATGTATAGTGTCAATGGACACAACTTATTGCTATGAAAGGCACTTTATTATAAGGCTTTTCATAGCA‑TTTTTTATTTAATGAGCCACTCAAGACTATTTATTTTTTCAATAATGAACCATTAAGTTATCAAGAGGATCTTATCAAAA  >  USA300TCH1516_ALE/724840‑725019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.