| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 744697 | 190 (1.000) | 16 (0.090) | 10/152 | NT | 7.9% | coding (1838/1980 nt) | melR_1 | Melibiose operon regulatory protein |
| ? | USA300TCH1516_ALE | = 744717 | 192 (1.060) | coding (1858/1980 nt) | melR_1 | Melibiose operon regulatory protein | |||||
AGTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/744604‑744697‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgTCTCGCTCTCTATCACTCGCCAATCATAAATAACAAGACAATAATAATTCTCTATATCAAAAATAGAATAATAACTGTTTTCGTATTTTG < USA300TCH1516_ALE/744717‑744628 AGTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGA < 2:2911951/91‑1AGTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGA < 2:2351965/91‑1AGTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGA < 2:3122221/91‑1AGTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGA > 1:3849937/1‑91 GTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGAT < 1:1263833/91‑1 GTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGAT > 2:3202585/1‑91 GTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGAT > 1:843054/1‑91 GTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGAT > 1:842816/1‑91 GTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGAT > 1:3861121/1‑91 GTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGAT < 1:2896074/91‑1 GTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGAT < 1:2940004/91‑1 TTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATT > 2:1528408/1‑91 TTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATT < 2:2374497/91‑1 TTTATCGAATATCTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATT > 1:2973655/1‑91 TTTATCGAATATATCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATT > 1:2973881/1‑91 TTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTa < 2:604350/91‑2 TTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTG < 2:2570969/91‑1 CGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCA < 1:2345260/91‑1 CGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCA < 2:1498842/91‑1 CGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCA < 2:1514419/91‑1 GAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCAC < 1:307226/91‑1 AAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCACT < 2:1163769/91‑1 CCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCACTCGC < 2:3635104/91‑1 CCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCACTCGC < 1:1700590/91‑1 CAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCACTCGCC < 1:3842545/91‑1 AAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCACTCGCCA < 1:833106/91‑1 ACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCACTCGCCAATCAT < 1:300433/91‑1 CGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCACTCGCCAATCATA < 1:1926600/91‑1 CGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCACTCGCCAATCATA < 1:1926601/91‑1 CGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCACTCGCCAATCATA < 1:345339/91‑1 ATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGTCTCGCTCTCTATCACTCGCCAATCATAAATAACAAGACAATAATAA < 1:448966/91‑1 ATAGAGAATTATTATTGTCTTGTTATTTATAATTGTCTCGCTCTCTATCACTCGCCAATCATAAATAACAAGACAATAATAATTCTCTATA < 2:2612562/91‑1 ATAGAGAATTATTATTGTCTTGTTACTCATAATTGTCTCGCTCTCTATCACTCGCCAATCATAAATAACAAGACAATAATAATTCTCTATA < 1:1568423/91‑1 ATTGTCTCGCTCTCTATCACTCGCCAATCATAAATAACAAGACAATAATAATTCTCTATATCAAAAATAGAATAATAACTGTTTTCGTATT < 2:2024072/91‑1 TTGTCTCGCTCTCTATCACTCGCCTATCATAAATAACAAGACAATAATAATTCTCTATATCAAAAATAGAATAATAACTGTTTTCGTATTT < 2:3608597/91‑1 TTGTCTCGCTCTCTATCACTCGCCAATCATAAATAACAAGACAATAATAATTCTCTATATCAAAAATAGAATAATAACTGTTTTCGTATTT < 2:2834196/91‑1 TTGTCTCGCTCTCTATCACTCGCCAATCATAAATAACAAGACAATAATAATTCTCTATATCAAAAATAGAATAATAACTGTTTTCGTATTT < 2:1654291/91‑1 TTGTCTCGCTCTCTATCACTCGCCAATCATAAATAACAAGACAATAATAATTCTCTATATCAAAAATAGAATAATAACTGTTTTCGTATTT < 2:148056/91‑1 TGTCTCGCTCTCTATCACTCGCCAATCATAAATAACAAGACAATAATAATAAAAAAAAAAAAAAATAGAATAATAACTGTTTTCGTATTTT < 2:2711194/91‑1 GTCTCGCTTTCTATCACTCGCCAATCGTAAATAACAAGACAATAATAATTCTCTATATCAATAATAGAATAATAACTGTTTTCGTATTTTG < 2:3369498/91‑1 GTCTCGCTCTCTATCACTCGCCAATCATAAATAACAAGACAATAATAATTCTCTATATCAAAAATAGAATAATAACTGTTTTCGTATTTTG < 2:3871356/91‑1 GTCTCGCTCTCTATCACTCGCCAATCATAAATAACAAGACAATAATAATTCTCTATATCAAAAATAGAATAATAACTGTTTTCGTATTTTG < 2:1365131/91‑1 AGTTTATCGAATATGTCTCGAAACCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/744604‑744697‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgTCTCGCTCTCTATCACTCGCCAATCATAAATAACAAGACAATAATAATTCTCTATATCAAAAATAGAATAATAACTGTTTTCGTATTTTG < USA300TCH1516_ALE/744717‑744628 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |