BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 744697	190 (1.000)	16 (0.090)	10/152	NT	7.9%	coding (1838/1980 nt)	melR_1	Melibiose operon regulatory protein
*	?	USA300TCH1516_ALE	= 744717	192 (1.060)	16 (0.090)	10/152	NT	7.9%	coding (1858/1980 nt)	melR_1	Melibiose operon regulatory protein

Only 100 of 242 total aligned reads displayed.

CCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTAATTGTAATAGAAACAT  >  USA300TCH1516_ALE/744627‑744807

ccAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCgaga                                                                                            >  2:299132/1‑91 (MQ=255)

 cAAAATACGAAAACAGTTATTATTCTATTATTGATATAGAGAATTATTATTGTCTTGTTATTTACGATTGGCGAGTGATAGAAAGCGAGAc                                                                                           <  2:3369498‑M2/91‑2 (MQ=255)

   aaaTACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATAGGCGAGTGATAGAGAGCGAGAcaa                                                                                         <  2:3608597‑M2/91‑4 (MQ=255)

     aTACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAAtt                                                                                       >  2:406230/1‑91 (MQ=255)

     aTACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAAtt                                                                                       >  2:400207/1‑91 (MQ=255)

         gAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGa                                                                                   <  2:1665365/91‑1 (MQ=255)

          aaaaCAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAg                                                                                  <  1:21317/91‑1 (MQ=255)

          aaaaCAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAg                                                                                  <  1:482565/91‑1 (MQ=255)

                gTTATTATTCTATTTTTGATATAGAGAATTATTGTTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAAttt                                                                            >  1:1068301/1‑91 (MQ=255)

                gTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAAttt                                                                            <  1:2590240/91‑1 (MQ=255)

                gTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAAttt                                                                            <  1:2589939/91‑1 (MQ=255)

                    ttattCTATTTTTGATATATAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAg                                                                        >  2:2090476/1‑91 (MQ=255)

                    ttattCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAg                                                                        >  2:1967279/1‑91 (MQ=255)

                      attCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGa                                                                      >  1:1177586/1‑91 (MQ=255)

                        tCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATa                                                                    >  1:1737062/1‑91 (MQ=255)

                        tCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATa                                                                    <  2:66839/91‑1 (MQ=255)

                        tCTATTTTTGATATAGAGAATTATTATTGCCTGGTTATTTATGATTGGCGAGTGATTGAGAGCGAGACAATTATGAGCAATTTTGAGGATa                                                                    >  2:3203651/1‑91 (MQ=255)

                         cTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAg                                                                   <  1:2357040/91‑1 (MQ=255)

                            tttttGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCa                                                                >  2:3083666/1‑91 (MQ=255)

                            tttttGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCa                                                                >  2:162988/1‑91 (MQ=255)

                               ttGATATAGAGAATTTTTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGt                                                             >  2:1490760/1‑91 (MQ=255)

                               ttGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGt                                                             <  2:213216/91‑1 (MQ=255)

                                tGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGtt                                                            >  2:514573/1‑91 (MQ=255)

                                tGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGtt                                                            <  1:2683963/91‑1 (MQ=255)

                                tGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGtt                                                            >  2:1244920/1‑91 (MQ=255)

                                tGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGtt                                                            >  2:3783106/1‑91 (MQ=255)

                                  atatAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTta                                                          >  2:1380156/1‑91 (MQ=255)

                                  atatAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTta                                                          >  1:3019557/1‑91 (MQ=255)

                                   tataGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTtat                                                         >  2:2723199/1‑91 (MQ=255)

                                   tataGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTtat                                                         >  1:1788075/1‑91 (MQ=255)

                                    ataGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTtata                                                        <  2:747371/91‑1 (MQ=255)

                                     taGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTtatat                                                       >  1:2145941/1‑91 (MQ=255)

                                     taGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATACAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTtatat                                                       <  1:3088434/91‑1 (MQ=255)

                                        agaATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATaaa                                                    >  1:1923750/1‑91 (MQ=255)

                                        agaATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATaaa                                                    <  2:1706559/91‑1 (MQ=255)

                                         gaATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAAt                                                   <  2:1896293/91‑1 (MQ=255)

                                            ttattattGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGAcaatcataaataacaagacaataataattctctatatcaaaaat                                                <  1:448966‑M2/91‑45 (MQ=255)

                                             tattattGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTa                                               >  1:3396683/1‑91 (MQ=255)

                                             tattattGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTa                                               >  2:2362224/1‑91 (MQ=255)

                                              attattGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTaa                                              >  1:2299721/1‑91 (MQ=255)

                                              attattGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAACTTTaa                                              >  2:3582171/1‑91 (MQ=255)

                                               ttattGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTaaa                                             >  1:2801167/1‑91 (MQ=255)

                                                tattGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTaaaa                                            >  2:2124635/1‑91 (MQ=255)

                                                 attGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAg                                                              >  1:328710/1‑72 (MQ=255)

                                                 attGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAg                                                              <  2:328710/72‑1 (MQ=255)

                                                 attGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTaaaaa                                           <  1:1393225/91‑1 (MQ=255)

                                                  ttGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGGGGATAGTCAAGTTTATATAAATTTTAAAAAc                                          >  2:2213661/1‑91 (MQ=255)

                                                   tGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACa                                         <  2:3417277/91‑1 (MQ=255)

                                                     tCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAAt                                       <  2:3494998/91‑1 (MQ=255)

                                                      cTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATg                                      <  1:50558/91‑1 (MQ=255)

                                                        tGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGtt                                    <  2:2013605/91‑1 (MQ=255)

                                                         gTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGttt                                   <  2:59947/91‑1 (MQ=255)

                                                          ttatttatGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGtttt                                  <  1:2502775/91‑1 (MQ=255)

                                                           tatttatGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTa                                 >  2:2754664/1‑91 (MQ=255)

                                                              ttatGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAAc                              >  2:638688/1‑91 (MQ=255)

                                                              ttatGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAAc                              >  1:2081654/1‑91 (MQ=255)

                                                               tatGATTGGCGAGTGATAGAGAGCGAGAcaatcataaataacaagacaataataattctctatatcaaaaatagaataataactgttttcg                             <  1:345339‑M2/91‑64 (MQ=255)

                                                               tatGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACg                             >  1:3543398/1‑91 (MQ=255)

                                                               tatGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACg                             <  2:2961232/91‑1 (MQ=255)

                                                                atGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGa                            >  2:2577775/1‑91 (MQ=255)

                                                                  gATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATa                          <  1:2027242/91‑1 (MQ=255)

                                                                  gATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATa                          <  1:3328155/91‑1 (MQ=255)

                                                                  gATTGGCGAGTGATAGAGAGCGAGAAAATTATGAGTAATGTTGAGGATAGTCACGTTTATATAAATTTTAAAAACAATGTTTTAAACGATa                          <  1:3614473/91‑1 (MQ=255)

                                                                   aTTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATaa                         >  2:1469054/1‑91 (MQ=255)

                                                                    ttGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATaaa                        <  2:2102726/91‑1 (MQ=255)

                                                                     tGGCGAGTGATAGAGAGCGAGAcaatcataaataacaagacaataataattctctatatcaaaaatagaataataactgttttcgtatttt                       <  1:833106‑M2/91‑70 (MQ=255)

                                                                     tGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAat                       <  1:652463/91‑1 (MQ=255)

                                                                     tGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAat                       >  1:146270/1‑91 (MQ=255)

                                                                     tGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAat                       <  1:90075/91‑1 (MQ=255)

                                                                     tGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAat                       <  2:2669166/91‑1 (MQ=255)

                                                                      ggCGAGTGATAGAGAGCGAGAcaatcataaataacaagacaataataattctctatatcaaaaatagaataataactgttttcgtattttg                      <  1:3842545‑M2/91‑71 (MQ=255)

                                                                      ggCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAata                      <  1:1116051/91‑1 (MQ=255)

                                                                       gCGAGTGATAGAGAGCGAGAcaatcataaataacaagacaataataattctctatatcaaaaatagaataataactgttttcgtattttgg                     <  2:3635104‑M2/91‑72 (MQ=255)

                                                                       gCGAGTGATAGAGAGCGAGAcaatcataaataacaagacaataataattctctatatcaaaaatagaataataactgttttcgtattttgg                     <  1:1700590‑M2/91‑72 (MQ=255)

                                                                        cGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATc                    <  1:3763119/91‑1 (MQ=255)

                                                                        cGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATc                    <  2:2246323/91‑1 (MQ=255)

                                                                        cGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATc                    >  1:1205212/1‑91 (MQ=255)

                                                                        cGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATc                    >  1:1953679/1‑91 (MQ=255)

                                                                          aGTGATAGAGAGCGAGAcaatcataaataacaagacaataataattctctatatcaaaaatagaataataactgttttcgtattttggttt                  <  2:1163769‑M2/91‑75 (MQ=255)

                                                                          aGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTa                  <  1:2771023/91‑1 (MQ=255)

                                                                          aGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTa                  >  2:1532829/1‑91 (MQ=255)

                                                                           gTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTaa                 <  2:1072133/91‑1 (MQ=255)

                                                                           gTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTaa                 >  1:582350/1‑91 (MQ=255)

                                                                           gTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTaa                 >  2:556100/1‑91 (MQ=255)

                                                                            tGATAGAGAGCGAGAcaatcataaataacaagacaataataattctctatatcaaaaatagaataataactgttttcgtattttggtttcg                <  2:1514419‑M2/91‑77 (MQ=255)

                                                                            tGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTAAt                >  2:2051472/1‑91 (MQ=255)

                                                                              aTAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTAATTg              <  1:1532829/91‑1 (MQ=255)

                                                                              aTAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTAATTg              <  1:3381150/91‑1 (MQ=255)

                                                                                agagagCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTAATTGTa            >  2:1385508/1‑91 (MQ=255)

                                                                                agagagCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTAATTGTa            >  1:2949337/1‑91 (MQ=255)

                                                                                agagagCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTAATTGTa            >  1:2950129/1‑91 (MQ=255)

                                                                                agagagCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTAATTGTa            >  1:3827108/1‑91 (MQ=255)

                                                                                  agagCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTAATTGTAAt          >  1:3785226/1‑91 (MQ=255)

                                                                                    agCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTAATTGTAATAg        <  1:1049710/91‑1 (MQ=255)

                                                                                    agCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTGTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTAATTGTAATAg        <  2:546060/91‑1 (MQ=255)

                                                                                     gCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTAATTGTAATAGa       <  1:3202585/91‑1 (MQ=255)

                                                                                       gagaCAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTAATTGTAATAGaaa     <  2:3119271/91‑1 (MQ=255)

                                                                                         gaCAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTAATTGTAATAGAAACa   >  2:3729887/1‑91 (MQ=255)

                                                                                         gaCAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTAATTGTAATAGAAACa   >  1:2433121/1‑91 (MQ=255)

                                                                                          aCAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTAATTGTAATAGAAACAt  <  1:2334431/91‑1 (MQ=255)

CCAAAATACGAAAACAGTTATTATTCTATTTTTGATATAGAGAATTATTATTGTCTTGTTATTTATGATTGGCGAGTGATAGAGAGCGAGACAATTATGAGTAATTTTGAGGATAGTCAAGTTTATATAAATTTTAAAAACAATGTTTTAAACGATAAATATCTAATTGTAATAGAAACAT  >  USA300TCH1516_ALE/744627‑744807

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.