| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 940823 = | 172 (0.900) | 12 (0.070) | 8/140 | NT | 7.7% | intergenic (+4/+52) | USA300HOU_RS04680/ptlE | Putative esterase/Neopentalenolactone D synthase |
| ? | USA300TCH1516_ALE | 940872 = | 137 (0.820) | intergenic (+53/+3) | USA300HOU_RS04680/ptlE | Putative esterase/Neopentalenolactone D synthase | |||||
GAACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/940922‑940823‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctagcagttTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGG > USA300TCH1516_ALE/940872‑940961 GAACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAG > 1:729200/1‑91GAACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAG > 1:348546/1‑91 AACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGC < 2:3385098/91‑1 AACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGC > 2:1294448/1‑91 ACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCT > 2:1560800/1‑91 CGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTA < 1:2792617/91‑1 CGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTA < 1:2792536/91‑1 CGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTA < 1:2792366/91‑1 GCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAG < 1:131239/91‑1 GCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAG < 2:1026695/91‑1 ATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCA < 2:3515666/91‑1 ATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCA < 1:1238883/91‑1 ATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCA > 1:1557895/1‑91 ATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTACTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCA > 2:3413527/1‑91 TTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAG > 1:1982884/1‑91 TGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGT < 1:2427439/91‑1 TGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGT > 2:3355138/1‑91 GAACAAGCATTTCTAAAACTACAATAATATAGCGCATAAAAAAACTGCTATCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTT < 2:3603495/91‑1 GAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTT > 2:2226487/1‑91 GAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTT > 2:3652435/1‑91 GAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTT > 2:324950/1‑91 GAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTT < 2:3274088/91‑1 GAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATAAATATCTCATAACATTTCAGCTAGCAGTT < 2:3387863/91‑1 AAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGT > 1:3386335/1‑75 AAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTACGAATATCTCATAACATTTCAGCTAGCAGT < 2:3386335/75‑1 ATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTT > 1:1062518/1‑91 AACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTC > 1:3650153/1‑91 AACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTC > 1:2946526/1‑91 ACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCA > 1:1437611/1‑91 ACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCA > 1:2062461/1‑91 CTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAA > 1:481267/1‑91 CTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAA > 2:3735016/1‑91 TGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAAT > 1:760242/1‑91 TAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCG > 1:2506895/1‑91 GTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGG > 2:3155731/1‑91 GTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGG > 2:3155624/1‑91 ATGAATATCTCATAACATTTCAGCTAGCAGTTCTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTT > 1:834836/1‑91 TAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTAC < 2:677364/91‑1 TAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTAC < 2:3678008/91‑1 TAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTAC > 2:2600229/1‑91 AGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACC < 1:647313/91‑1 AGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACC < 2:2270499/91‑1 GCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCA > 2:2875452/1‑91 GCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCA > 2:209961/1‑91 GCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCA < 1:2635516/91‑1 GCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCA < 1:3294661/91‑1 GCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCA > 1:596946/1‑91 CAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAA > 2:699969/1‑91 GTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAAT > 1:280411/1‑91 GTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAAT < 2:1186464/91‑1 TTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATG > 1:669043/1‑91 TTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATG < 1:2688282/91‑1 TTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGG < 2:1701597/91‑1 TTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGG > 1:101258/1‑91 TTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGG > 1:2333788/1‑91 TTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGG > 1:2333697/1‑91 TTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGG < 1:1634405/91‑1 TTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGG < 1:1633957/91‑1 TTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGG > 1:101368/1‑91 GAACGCATTGAACAAGCATTTCTAAAACTACAACAATATAGCGCATAAAAAAACTGCTAGCCGTAGTTATGAATATCTCATAACATTTCAGCTAGCAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/940922‑940823‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctagcagttTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGG > USA300TCH1516_ALE/940872‑940961 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |