| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1073608 = | 171 (0.900) | 11 (0.060) | 8/152 | NT | 6.4% | coding (215/483 nt) | purE | N5‑carboxyaminoimidazole ribonucleotide mutase |
| ? | USA300TCH1516_ALE | 1073634 = | 160 (0.880) | coding (241/483 nt) | purE | N5‑carboxyaminoimidazole ribonucleotide mutase | |||||
TTTGAACAATTGATAATAAAGAATCTATACCCTTTAAACTTTTTGTTTCAATCGGCACTCCAATAACTGGTAGCGTCGTTAATGATGCAACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1073700‑1073608‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accaGTTATTGGAGTGCCGATTGAAACAAAAAGTTTAAAGGGTATAGATTCTTTATTATCAATTGTTCAAATGCCAGGAGGTATTCCGGTTGCA > USA300TCH1516_ALE/1073634‑1073723 TTTGAACAATTGATAATAAAGAATCTATACCCTTTAAACTTTTTGTTTCAATCGGCACTCCAATAACTGGTAGCGTCGTTAATGATGCAAC > 2:3745310/1‑91TTTGAACAATTGATAATAAAGAATCTATACCCTTTAAACTTTTTGTTTCAATCGGCACTCCAATAACTGGTAGCGTCGTTAATGATGCAAC > 1:2184012/1‑91TTTGAACAATTGATAATAAAGAATCTATACCCTTTAAACTTTTTGTTTCAATCGGCACTCCAATAACTGGTAGCGTCGTTAATGATGCAAC < 1:2353885/91‑1TTTGAACAATTGATAATAAAGAATCTATACCCTTTAAACTTTTTGTTTCAATCGGCACTCCAATAACTGGTAGCGTCGTTAATGATGCAAC > 1:3857845/1‑91TTTGAACAATTGATAATAAAGAATCTATACCCTTTAAACTTTTTGTTGCAATCGGCACTCCAATAACTGGTAGCGTCGTTAATGATGCAAC < 2:2997090/91‑1 TTGAACAATTGATAATAAAGAATCTATACCCTTTAAACTTTTTGTTTCAATCGGCACTCCAATAACTGGTAGCGTCGTTAATGATGCAACC < 2:252229/91‑1 TTGAACAATTGATAATAAAGAATCTATACCCTTTAAACTTTTTGTTTCAATCGGCACTCCAATAACTGGTAGCGTCGTTAATGATGCAACC < 2:2141795/91‑1 TTGAACAATTGATAATAAAGAATCTATACCCTTTAAACTTTTTGTTTCAATCGGCACTCCAATAACTGGTAGCGTCGTTAATGATGCAACC < 2:2141884/91‑1 TTGAACAATTGATAATAAAGAATCTATACCCTTTAAACTTTTTGTTTCAATCGGCACTCCAATAACTGGTAGCGTCGTTAATGATGCAACC > 1:807198/1‑91 TTGAACAATTGATAATAAAGAATCTATACCCTTTAAACTTTTTGTTTCAATCGGCACTCCAATAACTGGTAGCGTCGTTAATGATGCAACC < 2:252285/91‑1 TTGAACAATTGATAATAAAGAATCTATACCCTTTAAACTTTTTGTTTCAATCGGCACTCCAATAACTGGTAGCGTCGTTAATGATGCAACC > 1:1607227/1‑91 AACAATTGATAATAAAGAATCTATACCCTTTAAACTTTTTGTTTCAATCGGCACTCCAATAACTGGTTGCATCATTAACGACGCTACCAGT < 1:60003/91‑1 CAATTGATAATAAAGAATCTATACCCTTTAAACTTTTTGTTTCAATCGGCACTCCAATAACTGGTTGCATCATTAACGACGCTACCAGTTA < 1:3084869/91‑1 ACCCTTTAAACTTTTTGTTTCAATCGGCACTCCAATCACTGGTAGCGTCGTTAATGATGCAACCAGTTATTGTAGTGCCGATTGAAACAAA > 2:2086056/1‑91 TTTTGTTTCAATCGGCACTCCAATAACTGGTTGCATCATTAACGACGCTACCAGTTATTGGAGTGCCGATTGAAACAAAAAGTTTAAAGGG < 1:1124512/91‑1 ACTGGTAGCGTCGTTAATGATGCAACCAGTTATTGGAGTGCCGATTGAAACAAAAAGTTTAAAGGGTATAGATTCTTTATTCTCAATCGTT > 1:3485659/1‑91 TGGTAGCGTCGTTAATGATGCAACCAGTTATTGGAGTGCCGATTGAAACAAAAAGTTTAAAGGGTATAGATTCTTTATTATCAATTGTTCA > 2:263814/1‑91 TGGTAGCGTCGTTAATGATGCAACCAGTTATTGGAGTGCCGATTGAAACAAAAAGTTTAAAGGGTATAGATTCTTTATTATCAATTGTTCA > 1:2121135/1‑91 GGTAGCGTCGTTAATGATGCAACCAGTTATTGGAGTGCCGATTGAAACAAAAAGTTTAAAGGGTATAGATTCTTTATTATCAATTGTTCAA > 1:3573924/1‑91 GTAGCGTCGTTAATGATGCAACCAGTTATTGGAGTGCCGATTGAAACAAAAAGTTTAAAGGGTATAGATTCTTTATTATCAATTGTTCAAA > 2:627809/1‑91 GTAGCGTCGTTAATGATGCAACCAGTTATTGGAGTGCCGATTGAAACAAAAAGTTTAAAGGGTATAGATTCTTTATTATCAATTGTTCAAA > 2:1842794/1‑91 GTAGCGTCGTTAATGATGCAACCAGTTATTGGAGTGCCGATTGAAACAAAAAGTTTAAAGGGTATAGATTCTTTATTATCAATTGTTCAAA > 2:2514397/1‑91 TAGCGTCGTTAATGATGCAACCAGTTATTGGAGTGCCGATTGAAACAAAAAGTTTAAAGGGTATAGATTCTTTATTATCAATTGTTCAAAT > 2:1426903/1‑91 TAGCGTCGTTAATGATGCAACCAGTTATTGGAGTGCCGATTGAAACAAAAAGTTTAAAGGGTATAGATTCTTTATTATCAATTGTTCAAAT > 2:1416742/1‑91 CCAGTTATTGGAGTGCCGATTGAAACAAAAAGTTTAAAGGGTATAGATTCTTTATTATCAATTGTTCAAATGCCAGGAGGTATTCCGGTTG > 2:936269/1‑91 CCAGTTATTGGAGTGCCGATTGAAACAAAAAGTTTAAAGGGTATAGATTCTTTATTATCAATTGTTCAAATGCCAGGAGGTATTCCGGTTG > 2:2045643/1‑91 CAGTTATTGGAGTGCCGATTGAAACAAAAAGTTTAAAGGGTATAGATTCTTTATTATCAATTGTTCAAATGCCAGGAGGTATTCCGGTTGC < 2:2279381/91‑1 AGTTATTGGAGTGCCGATTGAAACAAAAAGTTTAAAGGGTATAGATTCTTTCTTATCAATTGTTCAAATGCCAGGAGGTATTCCGGTTGCA > 2:3667867/1‑91 AGTTATTGGAGTGCCGATTGAAACAAAAAGTTTAAAGGGTATAGATTCTTTATTATCAATTGTTCAAATGCCAGGAGGTATTCCGGTTGCA > 2:3665917/1‑91 AGTTATTGGAGTGCCGATTGAAACAAAAAGTTTAAAGGGTATAGATTCTTTATTATCAATTGTTCAAATGCCAG > 2:1891933/1‑74 AGTTATTGGAGTGCCGATTGAAACAAAAAGTTTAAAGGGTATAGATTCTTTATTATCAATTGTTCAAATGCCAG < 1:1891933/74‑1 TTTGAACAATTGATAATAAAGAATCTATACCCTTTAAACTTTTTGTTTCAATCGGCACTCCAATAACTGGTAGCGTCGTTAATGATGCAACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1073700‑1073608‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accaGTTATTGGAGTGCCGATTGAAACAAAAAGTTTAAAGGGTATAGATTCTTTATTATCAATTGTTCAAATGCCAGGAGGTATTCCGGTTGCA > USA300TCH1516_ALE/1073634‑1073723 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |