| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1149564 = | 166 (0.870) | 10 (0.060) | 7/142 | NT | 6.5% | intergenic (+150/+21) | pheT_1/rnhC | Phenylalanine‑‑tRNA ligase beta subunit/Ribonuclease HIII |
| ? | USA300TCH1516_ALE | 1149598 = | 139 (0.820) | coding (926/939 nt) | rnhC | Ribonuclease HIII | |||||
CTTTCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1149662‑1149564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaggctttAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGGCG > USA300TCH1516_ALE/1149598‑1149687 CTTTCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTA < 2:2899803/91‑1CTTTCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTA < 2:1944921/91‑1CTTTCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTA < 1:1359461/91‑1 TTTCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAG < 2:2203240/91‑1 TTTCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAG > 1:3808943/1‑91 TTTCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAG < 1:1934011/91‑1 TTCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGA > 2:3792086/1‑91 TCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAG > 2:465540/1‑91 TCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAG > 1:3535160/1‑91 TCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAG < 1:927374/91‑1 CACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAGG > 2:90043/1‑91 CGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAGGCT < 2:2081296/91‑1 CGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAGGCT > 2:36278/1‑91 CGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAGGCT > 1:196171/1‑91 CGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCACAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAGGCT < 2:214978/91‑1 TTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAGGCTTT > 1:1240320/1‑91 TTAAAGCCTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTA > 1:3807029/1‑91 TAAAGCCTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAA > 1:2222961/1‑91 AAAGCCTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAA > 2:144750/1‑91 CCTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTG > 1:1347454/1‑91 CCTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTG > 1:1347493/1‑91 CTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGA > 2:1247573/1‑91 CTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGA > 2:1526200/1‑91 CTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTGTGGGCTTTTTCACCATTTTTAAAATGCATTTTTGAAATGGTATCTAATCGTGA > 1:3613966/1‑91 CTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAA > 1:683283/1‑91 ATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTT > 2:223016/1‑91 AGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAA < 1:1745377/91‑1 AGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAA > 2:368589/1‑91 AGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAA > 1:160136/1‑91 AGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAA > 1:161272/1‑91 AGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAA < 2:1373506/91‑1 AGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAA < 2:102488/91‑1 GAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAAT < 1:271281/91‑1 GAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAAT < 2:1816965/91‑1 GAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAAT > 1:3352480/1‑91 GAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAAT > 1:1524300/1‑91 GAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAAT > 1:1470595/1‑91 GAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAAT < 1:1039627/91‑1 GAGGCTTTAAAATTTTTTGGGCTTTTCCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAAT > 2:2219609/1‑91 GAGGCTTTAAAACTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTAGAAT > 1:2999602/1‑91 AGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATT > 2:708648/1‑91 AGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATT > 2:1503318/1‑91 AGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATT > 2:712871/1‑91 GGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGTAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTT > 2:3066422/1‑91 GGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTT < 1:860251/91‑1 GCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTT < 2:971487/91‑1 GCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTT > 1:1819211/1‑91 CTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTG < 2:2001937/91‑1 CTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTG < 2:631614/91‑1 TTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGG < 2:1159130/91‑1 TTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGG < 2:857970/91‑1 TTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGG < 2:858360/91‑1 TTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGG < 2:858387/91‑1 TTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGGC < 2:525032/91‑1 TAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGTAATTTTTTCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGGCG > 2:642845/1‑91 TAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGGCG < 2:2360101/91‑1 TAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGGCG > 1:392026/1‑91 TAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGGCG > 1:391893/1‑91 TAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGGCG > 1:3361741/1‑91 TAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGGCG > 1:1048279/1‑91 CTTTCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1149662‑1149564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaggctttAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGGCG > USA300TCH1516_ALE/1149598‑1149687 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |