BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1149564 =	166 (0.870)	10 (0.060)	7/142	NT	6.5%	intergenic (+150/+21)	pheT_1/rnhC	Phenylalanine‑‑tRNA ligase beta subunit/Ribonuclease HIII
*	?	USA300TCH1516_ALE	1149598 =	139 (0.820)	10 (0.060)	7/142	NT	6.5%	coding (926/939 nt)	rnhC	Ribonuclease HIII

Only 100 of 231 total aligned reads displayed.

TTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAA  >  USA300TCH1516_ALE/1149474‑1149654

cgccaaaattataaaaaaatacggtctttcacgtttagataccatttcaaaaaagcattttaaaaatcgtgaaaaagcccaaaaaatttta                                                                                            >  1:391893‑M1/91‑91 (MQ=255)

cgccaaaattataaaaaaatacggtctttcacgtttagataccatttcaaaaaagcattttaaaaatcgtgaaaaagcccaaaaaatttta                                                                                            >  1:1048279‑M1/91‑91 (MQ=255)

cgccaaaattataaaaaaatacggtctttcacgtttagataccatttcaaaaaagcattttaaaaatcgtgaaaaagcccaaaaaatttta                                                                                            <  2:2360101‑M1/1‑1 (MQ=255)

cgccaaaattataaaaaaatacggtctttcacgtttagaaaaaattacaaaaaagcattttaaaaatcgtgaaaaagcccaaaaaatttta                                                                                            >  2:642845‑M1/91‑91 (MQ=255)

  ccaaaattataaaaaaatacggtctttcacgtttagataccatttcaaaaaagcattttaaaaatcgtgaaaaagcccaaaaaattttaaa                                                                                          <  2:858360‑M1/3‑1 (MQ=255)

  aTTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATaaaa                                                                                          <  1:3120669/91‑1 (MQ=255)

  aTTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATaaaa                                                                                          <  1:644101/91‑1 (MQ=255)

  aTTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATaaaa                                                                                          >  1:3144078/1‑91 (MQ=255)

   tttttGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAg                                                                                         >  1:3325158/1‑91 (MQ=255)

    aaaattataaaaaaatacggtctttcacgtttagataccatttcaaaaaagcattttaaaaatcgtgaaaaagcccaaaaaattttAAAGc                                                                                        >  1:1819211‑M1/87‑91 (MQ=255)

     aaattataaaaaaatacggtctttcacgtttagataccatttcaaaaaagcattttaaaaatcgtgaaaaagcccaaaaaattttAAAGcc                                                                                       <  1:860251‑M1/6‑1 (MQ=255)

      ttGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCct                                                                                      <  2:3244575/91‑1 (MQ=255)

      ttGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCct                                                                                      <  2:490768/91‑1 (MQ=255)

      aattataaaaaaatacggtctttcacgtttagataccatttcaaaaaagcattttaaaaatcgtgaaaaagcccaaaaaattttAAAGCct                                                                                      >  2:1503318‑M1/85‑91 (MQ=255)

      aattataaaaaaatacggtctttcacgtttagataccatttcaaaaaagcattttaaaaatcgtgaaaaagcccaaaaaattttAAAGCct                                                                                      >  2:712871‑M1/85‑91 (MQ=255)

       tGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCctc                                                                                     >  2:93405/1‑91 (MQ=255)

       attataaaaaaatacggtctttcacgtttagataccatttcaaaaaagcattttaaaaatcgtgaaaaagcccaaaaaattttAAAGCctc                                                                                     <  1:271281‑M1/8‑1 (MQ=255)

       attataaaaaaatacggtctttcacgtttagataccatttcaaaaaagcattttaaaaatcgtgaaaaagcccaaaaaattttAAAGCctc                                                                                     >  1:3352480‑M1/84‑91 (MQ=255)

        ttataaaaaaatacggtctttcacgtttagataccatttcaaaaaagcattttaaaaatcgtgaaaaagcccaaaaaattttAAAGCctct                                                                                    >  1:161272‑M1/83‑91 (MQ=255)

        ttataaaaaaatacggtctttcacgtttagataccatttcaaaaaagcattttaaaaatcgtgaaaaagcccaaaaaattttAAAGCctct                                                                                    <  2:102488‑M1/9‑1 (MQ=255)

        ttataaaaaaatacggtctttcacgtttagataccatttcaaaaaagcattttaaaaatcgtgaaaaagcccaaaaaattttAAAGCctct                                                                                    >  2:368589‑M1/83‑91 (MQ=255)

           ttCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAAt                                                                                 >  1:513125/1‑91 (MQ=255)

             cACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGa                                                                               <  1:815115/91‑1 (MQ=255)

             cACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGa                                                                               <  1:2229593/91‑1 (MQ=255)

              aaaaatacggtctttcacgtttagataccatttcaaaaaagcattttaaaaatcgtgaaaaagcccaaaaaattttAAAGCCTCTAATGAt                                                                              >  2:223016‑M1/77‑91 (MQ=255)

              aCCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGAt                                                                              <  1:2642833/91‑1 (MQ=255)

              aCCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGAt                                                                              <  2:1730446/91‑1 (MQ=255)

              aCCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGAt                                                                              >  1:1373506/1‑91 (MQ=255)

               ccAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGAtt                                                                             >  1:712993/1‑91 (MQ=255)

                cAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTa                                                                            <  2:2778625/91‑1 (MQ=255)

                  aTTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTaaa                                                                          >  1:1678255/1‑91 (MQ=255)

                   tttGGTTCCAATGCATTTAAAAAGTCCAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTaaaa                                                                         >  2:2215164/1‑91 (MQ=255)

                   tttGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTaaaa                                                                         >  1:2367274/1‑91 (MQ=255)

                   tttGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTaaaa                                                                         >  1:2366513/1‑91 (MQ=255)

                   tttGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTaaaa                                                                         >  2:1407807/1‑91 (MQ=255)

                   ttgggTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAATCCTCTAATGATTaaaa                                                                         <  1:1554591/88‑1 (MQ=255)

                      ggTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATc                                                                      <  2:1172913/91‑1 (MQ=255)

                       gTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCa                                                                     >  1:1703731/1‑91 (MQ=255)

                       gTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACAGCATAAAAGCCACTAATGATTAAAAATCa                                                                     >  2:3044892/1‑91 (MQ=255)

                          tttcacgtttagataccatttcaaaaaagcattttaaaaatcgtgaaaaagcccaaaaaattttAAAGCCTCTAATGATTAAAAATCAAag                                                                  >  1:683283‑M1/65‑91 (MQ=255)

                          ccAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAag                                                                  >  2:3656781/1‑91 (MQ=255)

                           cAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAaga                                                                 >  1:352707/1‑91 (MQ=255)

                            tcacgtttagataccatttcaaaaaagcattttaaaaatcgtgaaaaagcccaaaaaattttAAAGCCTCTAATGATTAAAAATCAAagag                                                                >  2:1247573‑M1/63‑91 (MQ=255)

                            aaTGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTGAAAATCAAagag                                                                <  2:3325158/91‑1 (MQ=255)

                             aTGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAGAATCAAAGAgg                                                               >  1:3760008/1‑91 (MQ=255)

                                 tttagataccatttcaaaaaagcattttaaaaatcgtgaaaaagcccaaaaaattttAAAGCCTCTAATGATTAAAAATCAAAGAGGCttt                                                           >  2:144750‑M1/58‑91 (MQ=255)

                                 aTTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCttt                                                           <  1:2052466/91‑1 (MQ=255)

                                 aTTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCttt                                                           <  1:2216308/91‑1 (MQ=255)

                                   ttAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTaa                                                         >  1:1426837/1‑91 (MQ=255)

                                      aaaaGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAAt                                                      >  2:340936/1‑91 (MQ=255)

                                      aaaaGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAAt                                                      >  2:1007200/1‑91 (MQ=255)

                                       aaaGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAAtt                                                     >  2:1127433/1‑91 (MQ=255)

                                       aaaGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAAtt                                                     >  2:2032500/1‑91 (MQ=255)

                                        aaGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAAttt                                                    <  2:2560266/91‑1 (MQ=255)

                                          gTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAAttttt                                                  >  1:363605/1‑91 (MQ=255)

                                            cAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTg                                                <  1:2700408/91‑1 (MQ=255)

                                            cAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTg                                                <  1:2383389/91‑1 (MQ=255)

                                            cAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTg                                                >  2:745578/1‑91 (MQ=255)

                                            cAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTg                                                >  2:660599/1‑91 (MQ=255)

                                            cAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTGTTTg                                                >  1:3229803/1‑91 (MQ=255)

                                             aaaGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTgg                                               <  2:776238/91‑1 (MQ=255)

                                             aaaGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTgg                                               >  2:538499/1‑91 (MQ=255)

                                              aaGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTggg                                              <  1:1104250/91‑1 (MQ=255)

                                              aaGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTggg                                              >  1:1595997/1‑91 (MQ=255)

                                                  ggAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCttt                                          >  1:3075817/1‑91 (MQ=255)

                                                    aaCAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCttttt                                        >  1:1298274/1‑91 (MQ=255)

                                                     aCAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTc                                       <  2:1924354/91‑1 (MQ=255)

                                                      cAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCa                                      >  2:1150556/1‑91 (MQ=255)

                                                      cAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCa                                      >  2:1639777/1‑91 (MQ=255)

                                                       aGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCAc                                     <  1:1148941/91‑1 (MQ=255)

                                                       aGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCAc                                     >  2:2423348/1‑91 (MQ=255)

                                                        gCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACg                                    <  2:3152605/91‑1 (MQ=255)

                                                            aaTACAGATGATGCTACGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGAttt                                <  1:744125/91‑1 (MQ=255)

                                                                cAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTaa                            <  1:2903601/91‑1 (MQ=255)

                                                                 aGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTaaa                           <  2:3535238/91‑1 (MQ=255)

                                                                 aGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTaaa                           <  2:2666165/91‑1 (MQ=255)

                                                                  gatgatGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTaaaa                          >  1:1003907/1‑91 (MQ=255)

                                                                  gatgatGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTaaaa                          <  2:1991005/91‑1 (MQ=255)

                                                                   atgatgCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAAt                         <  1:1506844/91‑1 (MQ=255)

                                                                     gatgCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGc                       >  1:102488/1‑91 (MQ=255)

                                                                        gCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCttt                    <  1:943677/91‑1 (MQ=255)

                                                                         cTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCtttt                   <  2:2367274/91‑1 (MQ=255)

                                                                          ttCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCttttt                  >  1:284694/1‑91 (MQ=255)

                                                                            cGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCttttttt                >  2:249363/1‑90 (MQ=255)

                                                                            cGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTg                >  2:3728613/1‑91 (MQ=255)

                                                                            cGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTg                >  1:403533/1‑91 (MQ=255)

                                                                             gCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGa               <  1:1724081/91‑1 (MQ=255)

                                                                              cacaACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGaa              <  1:1471885/91‑1 (MQ=255)

                                                                              cacaACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGaa              <  1:436001/91‑1 (MQ=255)

                                                                                 aaCTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATg           <  1:239343/91‑1 (MQ=255)

                                                                                 aaCTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATg           >  1:1430708/1‑91 (MQ=255)

                                                                                   cTGCATAAAAGCATCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGt         >  1:2971554/1‑91 (MQ=255)

                                                                                    tGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTa        <  2:62406/91‑1 (MQ=255)

                                                                                    tGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTa        <  2:1760759/91‑1 (MQ=255)

                                                                                    tGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTa        >  2:899049/1‑91 (MQ=255)

                                                                                        tAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATc      >  2:3771502/1‑89 (MQ=255)

                                                                                        tAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTa    >  1:1186696/1‑91 (MQ=255)

                                                                                        tAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTa    <  1:1808933/91‑1 (MQ=255)

                                                                                        tAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTa    >  2:237160/1‑91 (MQ=255)

                                                                                        tAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTACACGATTTTTAAAATGCTTTTTTGAAATGGTATCTa    >  2:3831110/1‑91 (MQ=255)

TTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAA  >  USA300TCH1516_ALE/1149474‑1149654

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.