| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1164949 | 200 (1.050) | 15 (0.090) | 10/148 | NT | 6.9% | intergenic (+13/+356) | fib_1/flr_1 | Fibrinogen‑binding protein/FPRL1 inhibitory protein |
| ? | USA300TCH1516_ALE | = 1164961 | 219 (1.240) | intergenic (+25/+344) | fib_1/flr_1 | Fibrinogen‑binding protein/FPRL1 inhibitory protein | |||||
TAATTCATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1164854‑1164949‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagccaCACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCATAAC < USA300TCH1516_ALE/1164961‑1164872 TAATTCATTTCAAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGA < 2:2253943/91‑1 AATTCATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAA < 2:255187/91‑1 ATTCATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAG < 1:3440424/91‑1 ATTCATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAG < 1:3238365/91‑1 ATTCATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAG < 1:3130755/91‑1 ATTCATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAG > 2:2769377/1‑91 ATTCATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAG < 2:918335/91‑1 ATTCATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAG > 1:1317138/1‑91 ATTCATTCCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAG < 1:2720954/91‑1 tgCATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGC < 2:651282/89‑1 TTCATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGC < 1:1372917/91‑1 TTCATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGC > 1:2511494/1‑91 TTCATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGC < 1:2864533/91‑1 TTCATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGC < 1:2864759/91‑1 TTCATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGC < 2:1304070/91‑1 TTCATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGC < 2:113939/91‑1 TTCATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGC < 2:965985/91‑1 TTCATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGC > 1:1006377/1‑91 CATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCA > 1:350375/1‑91 CATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCA > 2:1946605/1‑91 CATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCA < 1:786203/91‑1 CATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCA < 2:26660/91‑1 TTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCACA < 1:908237/91‑1 AACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCACACTCTA < 2:2316907/91‑1 AACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCACACTCTA < 1:3803783/91‑1 AACACAGTTATGAAAAGAAAAAACTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCACACTCTA < 1:3803885/91‑1 atcaTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCACACTCTATAGC < 1:1019642/87‑1 GTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCACACTCTATAGCAT < 2:646958/91‑1 GTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCACACTCTATAGCAT < 1:2205552/91‑1 GTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCACACTCTATAGCAT < 1:2205930/91‑1 TATGTAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCACACTCTATAGCATGG < 1:3226283/91‑1 AAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCACACTCTATAGCATGGCTTC < 1:1235876/91‑1 AAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCACACTCTATAGCATGGCTTC < 1:2500076/91‑1 AAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCACACTCTATAGCATGGCTTCT < 2:654974/91‑1 AAATTACAAAGGCAACTCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCACACTCTATAGCATGGCTTCTATCAATT < 2:3057316/91‑1 TCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCACAC < 2:2995803/51‑1 TCGATCTAGTTTCAAAATATAATACTTTAAAATAATTGATAGAAGCCACAC > 1:2995803/1‑51 AATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATC > 1:45087/1‑91 TAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATT > 1:331112/1‑91 ATTGATAGAAGCCATGCTATAGAGTGTGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTT > 1:620224/1‑91 AAGCCACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTt > 2:3030707/1‑90 AAGCCACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTC > 1:3397063/1‑91 AAGCCACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTC < 1:420650/91‑1 AAGCCACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTC < 1:420716/91‑1 AGCCACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCA < 2:476328/91‑1 GCCACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCAT < 2:1772264/91‑1 GCCACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCAT < 2:1772069/91‑1 GCCACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCAT < 2:2627694/91‑1 CCACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCATA < 1:2178039/91‑1 CCACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCATA < 1:2177958/91‑1 CCACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCATA < 1:2573968/91‑1 CCACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCATA > 2:113768/1‑91 CCACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCATA > 1:408187/1‑91 CCACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCATA < 2:3251869/91‑1 CCACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTAGTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCATA > 2:2947757/1‑91 CCACACTCTATAGCAAGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCATA > 1:69446/1‑91 CACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCATAA > 2:3102953/1‑91 CACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCATAA > 1:1585827/1‑91 CACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCATAA > 2:1317138/1‑91 ACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCATAAC < 2:3764597/91‑1 ACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCATAAC < 2:3764841/91‑1 ACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCATAAC > 2:1191226/1‑91 ACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCATAAC > 1:2941753/1‑91 ACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGGAATTTTTTCTTTTCATAAC < 2:3389238/91‑1 ACACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATCTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCATAAC > 1:1799246/1‑91 TAATTCATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1164854‑1164949‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagccaCACTCTATAGCATGGCTTCTATCAATTATTTTAAAGTATTATATTTTAAAACTAGATCGATTTGTCTTTGTAATTTTTTCTTTTCATAAC < USA300TCH1516_ALE/1164961‑1164872 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |