BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1164949	200 (1.050)	15 (0.090)	10/148	NT	6.9%	intergenic (+13/+356)	fib_1/flr_1	Fibrinogen‑binding protein/FPRL1 inhibitory protein
*	?	USA300TCH1516_ALE	= 1164961	219 (1.240)	15 (0.090)	10/148	NT	6.9%	intergenic (+25/+344)	fib_1/flr_1	Fibrinogen‑binding protein/FPRL1 inhibitory protein

Only 100 of 280 total aligned reads displayed.

AGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTGGGATAAATAATATAAATAAT  >  USA300TCH1516_ALE/1164871‑1165051

aGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAgtg                                                                                            <  1:895267/91‑1 (MQ=255)

 gTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGt                                                                                           >  1:2941753‑M2/1‑90 (MQ=255)

 gTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGt                                                                                           <  2:3764841‑M2/91‑2 (MQ=255)

  ttATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGtg                                                                                          >  2:3102953‑M2/1‑89 (MQ=255)

   tATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGtgg                                                                                         <  2:3251869‑M2/91‑4 (MQ=255)

   tATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGtgg                                                                                         <  1:2177958‑M2/91‑4 (MQ=255)

    aTGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGtggc                                                                                        <  2:1772264‑M2/91‑5 (MQ=255)

     tGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGtggct                                                                                       <  2:476328‑M2/91‑6 (MQ=255)

      gaaaagaaaaAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGtggctt                                                                                      <  1:420716‑M2/91‑7 (MQ=255)

      gaaaagaaaaAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGtggctt                                                                                      >  1:3397063‑M2/1‑85 (MQ=255)

       aaaagaaaaAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCttt                                                                                     <  2:3399440/91‑1 (MQ=255)

         aagaaaaAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCttttt                                                                                   >  1:1776230/1‑91 (MQ=255)

            aaaaaaTTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCt                                                                                <  1:366487/91‑1 (MQ=255)

             aaaaaTTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCta                                                                               <  2:2613276/91‑1 (MQ=255)

             aaaaaTTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCta                                                                               >  1:2320581/1‑91 (MQ=255)

             aaaaaTTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCta                                                                               <  2:1167734/91‑1 (MQ=255)

              aaaaTTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCtat                                                                              <  2:2885592/91‑1 (MQ=255)

              aaaaTTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCtat                                                                              <  1:2456550/91‑1 (MQ=255)

               aaaTTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCtata                                                                             >  2:1592421/1‑91 (MQ=255)

                aaTTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTatat                                                                            >  1:1478245/1‑91 (MQ=255)

                aaTTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGGGTGGCTTTTTGCTatat                                                                            >  1:1001570/1‑91 (MQ=255)

                 aTTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGTTATATc                                                                           >  2:703957/1‑91 (MQ=255)

                    aCAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCaa                                                                        >  1:3714872/1‑91 (MQ=255)

                    aCAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCaa                                                                        <  1:3334350/91‑1 (MQ=255)

                    aCAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCaa                                                                        >  1:2289454/1‑91 (MQ=255)

                    aCAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCaa                                                                        >  2:1251284/1‑91 (MQ=255)

                     cAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCaaa                                                                       >  1:604973/1‑91 (MQ=255)

                     cAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCaaa                                                                       >  1:1308894/1‑91 (MQ=255)

                         gACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGta                                                                   <  2:2474855/91‑1 (MQ=255)

                         gACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGta                                                                   <  2:1108973/91‑1 (MQ=255)

                          aCAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAATGGtat                                                                  >  2:621128/1‑91 (MQ=255)

                           cAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGtata                                                                 >  1:3674949/1‑91 (MQ=255)

                            aaaTCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATaa                                                                <  2:3019789/91‑1 (MQ=255)

                            aaaTCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATaa                                                                <  1:2058027/91‑1 (MQ=255)

                               tCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAatta                                                             >  1:3255258/1‑91 (MQ=255)

                               tCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAatta                                                             <  2:3809293/91‑1 (MQ=255)

                               tCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAatta                                                             <  2:1473330/91‑1 (MQ=255)

                                  aTCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTAttt                                                          <  2:1525720/91‑1 (MQ=255)

                                  aTCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAACCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTAttt                                                          <  2:3409219/91‑1 (MQ=255)

                                   tCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTAtttt                                                         <  1:793556/91‑1 (MQ=255)

                                    cTAGTTTTTAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTGTTGCTATATCCAAAGGTATAATTATTTta                                                        <  2:3378416/91‑1 (MQ=255)

                                      aGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTtata                                                      <  1:2861485/91‑1 (MQ=255)

                                      aGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCCATATCCAAAGGTATAATTATTTtata                                                      <  2:2195279/91‑1 (MQ=255)

                                       gTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTataa                                                     >  1:682638/1‑91 (MQ=255)

                                         tttAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTATataata                                                   >  1:1951241/1‑91 (MQ=255)

                                          ttAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAatat                                                  >  2:1368258/1‑91 (MQ=255)

                                           tAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATAtt                                                 <  1:323669/91‑1 (MQ=255)

                                            aaaaTATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATtg                                                <  2:1043035/91‑1 (MQ=255)

                                                tataATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTAGTTTATAATATTGTGtt                                            >  2:2975928/1‑91 (MQ=255)

                                                 ataataCTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGttt                                           <  1:1597166/91‑1 (MQ=255)

                                                 ataataCTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGttt                                           <  1:3572897/91‑1 (MQ=255)

                                                 ataataCTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGttt                                           <  1:3856913/91‑1 (MQ=255)

                                                 ataataCTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGttt                                           <  2:1911695/91‑1 (MQ=255)

                                                 ataataCTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGttt                                           >  1:3137305/1‑91 (MQ=255)

                                                  taataCTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTa                                          >  1:1076357/1‑91 (MQ=255)

                                                   aataCTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTAt                                         <  2:2637992/91‑1 (MQ=255)

                                                   aataCTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTAt                                         <  1:3880351/91‑1 (MQ=255)

                                                     taCTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTAttt                                       >  2:332925/1‑91 (MQ=255)

                                                     taCTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATATTATAATATTGAGTTTAttt                                       >  2:650833/1‑91 (MQ=255)

                                                      aCTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTg                                      <  2:2151942/91‑1 (MQ=255)

                                                       cTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGa                                     <  1:470196/91‑1 (MQ=255)

                                                       cTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGa                                     >  2:548030/1‑91 (MQ=255)

                                                           aaaaTAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATgg                                 <  1:405931/91‑1 (MQ=255)

                                                            aaaTAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGt                                <  1:64375/91‑1 (MQ=255)

                                                              ataatTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGa                              >  2:1707429/1‑91 (MQ=255)

                                                                aatTGATAGAAGCCATGCTATAGAGTGtggcttctatcaattattttaaagtattatattttaaaactagatcgagttgcctttgtaattt                            <  2:3057316‑M2/91‑65 (MQ=255)

                                                                 atTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCt                           <  2:2402989/91‑1 (MQ=255)

                                                                 atTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCt                           >  1:2538364/1‑91 (MQ=255)

                                                                  ttGATAGAAGCCATGCTATAGAGTGTGGCTTTTTTTTTTATTCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCtt                          >  2:3653857/1‑91 (MQ=255)

                                                                  ttGATAGAAGCCATGCGATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCtt                          <  2:3714872/91‑1 (MQ=255)

                                                                   tGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTa                         >  1:3205364/1‑91 (MQ=255)

                                                                      tAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTg                      >  1:2020454/1‑91 (MQ=255)

                                                                      tAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTg                      >  1:3050536/1‑91 (MQ=255)

                                                                       aGAAGCCATGCTATAGAGTGTGGCTTTTTGCTTTATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTgg                     >  2:1599860/1‑91 (MQ=255)

                                                                       aGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTgg                     >  1:1418110/1‑91 (MQ=255)

                                                                        gAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTggg                    <  2:2927895/91‑1 (MQ=255)

                                                                         aaGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTGGGa                   <  2:2030659/91‑1 (MQ=255)

                                                                          aGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTGGGat                  >  1:2804235/1‑91 (MQ=255)

                                                                          aGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTGGGat                  >  1:1686520/1‑91 (MQ=255)

                                                                           gCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTGGGata                 >  1:93893/1‑91 (MQ=255)

                                                                            ccATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTGGGataa                <  1:1210462/91‑1 (MQ=255)

                                                                             cATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTGGGataaa               <  1:3301002/91‑1 (MQ=255)

                                                                              aTGCTATAGAGTGtggcttctatcaattattttaaagtattatattttaaaactagatcgatttgtctttgtaattttttcttttcataac              <  1:2205930‑M2/91‑79 (MQ=255)

                                                                              aTGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTGGGataaat              <  2:903287/91‑1 (MQ=255)

                                                                              aTGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTGGGataaat              >  1:1838747/1‑91 (MQ=255)

                                                                              aTGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTGGGataaat              >  2:2273239/1‑91 (MQ=255)

                                                                              aTGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTGGGataaat              >  2:3132866/1‑91 (MQ=255)

                                                                               tGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTGGGataaata             >  2:2082293/1‑91 (MQ=255)

                                                                                 cTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTGGGataaataat           <  2:352597/91‑1 (MQ=255)

                                                                                  tataGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTGGGataaataata          <  2:5216/91‑1 (MQ=255)

                                                                                  tataGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTGGGataaataata          >  1:1260985/1‑91 (MQ=255)

                                                                                   ataGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTGGGataaataatat         <  2:1327542/91‑1 (MQ=255)

                                                                                   ataGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTGGGataaataatat         <  2:1327328/91‑1 (MQ=255)

                                                                                    taGAGTGtggcttctatcaattattttaaagtattatattttaaaactagatcgatttgtctttgtagttttttcttttcataactgtgtt        <  1:3803885‑M2/91‑85 (MQ=255)

                                                                                    taGAGTGtggcttctatcaattattttaaagtattatattttaaaactagatcgatttgtctttgtaattttttcttttcataactgtgtt        <  2:2316907‑M2/91‑85 (MQ=255)

                                                                                     agagTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTGGGataaataatataa       <  1:306177/91‑1 (MQ=255)

                                                                                     agagTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTGGGataaataatataa       >  1:2952844/1‑91 (MQ=255)

                                                                                        gtgtggcttctatcaattattttaaagtattatattttgaaactagatcga                                            >  1:2995803‑M2/1‑3 (MQ=255)

                                                                                         tgtggcttctatcaattattttaaagtattatattttaaaactagatcgatttgtctttgtaattttttcttttcataactgtgttggaaa   <  1:908237‑M2/91‑90 (MQ=255)

                                                                                         tgtgGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTGGGataaataatataaataa   <  2:2802099/91‑1 (MQ=255)

AGTTATGAAAAGAAAAAATTACAAAGACAAATCGATCTAGTTTTAAAATATAATACTTTAAAATAATTGATAGAAGCCATGCTATAGAGTGTGGCTTTTTGCTATATCCAAAGGTATAATTATTTTATAATATTGTGTTTATTTGAATGGTGAGCTTATTGGGATAAATAATATAAATAAT  >  USA300TCH1516_ALE/1164871‑1165051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.