| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1168159 | 177 (0.930) | 38 (0.230) | 24/140 | NT | 18.2% | intergenic (+15/+638) | scn_2/USA300HOU_RS05810 | Staphylococcal complement inhibitor/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1168177 | 186 (1.120) | intergenic (+33/+620) | scn_2/USA300HOU_RS05810 | Staphylococcal complement inhibitor/hypothetical protein | |||||
AAAAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1168061‑1168159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacaggttAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAGC < USA300TCH1516_ALE/1168177‑1168088 AAAAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAA < 2:29124/91‑1AAAAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAA < 2:29191/91‑1 AAAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAA < 2:1266803/91‑1 AAAATGATTACGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAA < 1:3721594/91‑1 AAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAA < 1:3697851/91‑1 AAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAA < 1:3574560/91‑1 AATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAAC < 1:2024675/91‑1 ATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACA > 2:2306188/1‑91 ATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACA > 2:3091159/1‑91 ATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACA > 1:2431795/1‑91 ATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAAC < 1:1191685/90‑1 ATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAAC > 2:1191685/1‑90 GATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGG > 2:392616/1‑91 GATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGG > 1:2622581/1‑91 GATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGG < 2:309517/91‑1 GATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGG > 2:392654/1‑91 ATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATCGATAGATACTAAATAAAACAAGT > 1:597717/1‑91 ATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGT > 1:597811/1‑91 ATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGT > 2:1583519/1‑91 ATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGT > 2:2012647/1‑91 ATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGT < 1:2570120/91‑1 TTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTT < 1:2840272/91‑1 CGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAG < 2:2092920/91‑1 AATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATT < 2:2919570/91‑1 TGATGCTAAAGTAACATAAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGT < 2:1311170/91‑1 ATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCT < 1:2270999/91‑1 TGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTC < 2:2365694/91‑1 TGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTC < 1:711739/91‑1 GCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCA < 1:2496659/91‑1 TAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAAC < 1:184675/91‑1 TAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAAC < 2:2674219/91‑1 TAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAAC < 1:153363/91‑1 AAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACC < 1:634925/91‑1 AAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCT < 2:3763636/91‑1 GTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGT < 1:3591049/91‑1 GCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTT < 1:931372/91‑1 GCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTT < 2:1639885/91‑1 GCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTT < 1:339627/91‑1 GCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTT < 1:3391102/91‑1 GCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTT < 1:3390928/91‑1 aATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTA < 2:3882388/90‑1 CATTAGAAAAAATATACAAAGAAAGTGAGGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTA < 2:2603212/91‑1 ATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGTTTAAGACCATTTTTTGTCTCAACCTGTTTTAT < 2:1773226/91‑1 TTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCT < 1:3518903/77‑1 TTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCT > 2:3518903/1‑77 TAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTT < 2:2035034/91‑1 AGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTA < 1:584461/91‑1 AGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTA < 2:3237928/91‑1 GAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTAT < 1:3144870/91‑1 AAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATT < 1:1638342/91‑1 AATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCT < 2:711057/91‑1 AATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCT < 2:711149/91‑1 TACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTT < 1:3060974/91‑1 TACAAAGAAATTGAATATAATATAAATAGATAATAAAGAATACAATTTAAGACCATTTATTGTCTCAACCTGTTTTATTTATTATCTATTT < 2:2624284/91‑1 ACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTA < 1:833416/91‑1 cgAAGGAAGTGATGAAAGTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTGTGTCTCAACCTGTTTTATTTATTATCTATTTAT < 2:1331640/89‑1 CAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTAT < 2:1331793/91‑1 GATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCA < 2:3101285/91‑1 GATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCA < 2:3101284/91‑1 ATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAA < 1:1648968/91‑1 AAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTA < 2:3258200/91‑1 atACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCA > 2:177414/3‑91 AAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCA > 1:788/1‑91 AAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCA > 2:2576812/1‑91 AAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCA > 1:2297/1‑91 AAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCA > 2:2576742/1‑91 AAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCA > 1:2482451/1‑91 AAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATACTTTTTCTAATGCA > 1:3878728/1‑91 AACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAA > 1:2454001/1‑91 ACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAAC > 1:3376965/1‑91 ACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAAC > 2:3099738/1‑91 ACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAAC > 2:3099755/1‑91 CAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACT < 2:1188236/91‑1 AGGTTAAGACCATTTTTTGTTTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTT > 2:1800934/1‑91 AGGTTAAGACCATTTTTTGTCTTAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTT > 2:3248257/1‑91 AGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTT < 1:2277346/91‑1 AGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTT < 1:2277302/91‑1 AGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTT < 1:2277301/91‑1 AGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTT > 2:2595256/1‑91 GGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTT < 1:2934374/91‑1 GGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTT < 1:2934758/91‑1 GGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTT < 2:2875764/91‑1 GGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATGTCTTTGTATATTTTTTCTAATGCAACTTT < 2:3383591/91‑1 TTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAG < 1:2192102/91‑1 TAAGACCATTTTTTTTTTCTTTTTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCTACTTTAGC > 2:3119969/1‑91 TAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAGC < 1:912596/91‑1 TAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAGC < 1:912747/91‑1 TAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAGC < 1:2753805/91‑1 TAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAGC < 2:3255865/91‑1 AAAAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1168061‑1168159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacaggttAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAGC < USA300TCH1516_ALE/1168177‑1168088 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |