| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1181842 = | 189 (0.990) | 18 (0.110) | 13/144 | NT | 10.7% | intergenic (+409/+65) | USA300HOU_RS05885/USA300TCH1516_01103 | hypothetical protein/tRNA‑Arg |
| ? | USA300TCH1516_ALE | 1181881 = | 130 (0.760) | intergenic (+448/+26) | USA300HOU_RS05885/USA300TCH1516_01103 | hypothetical protein/tRNA‑Arg | |||||
TCGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1181938‑1181842‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTG > USA300TCH1516_ALE/1181881‑1181969 TCGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTT > 2:994238/1‑91TCGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTT < 2:3866717/91‑1TCGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTT > 2:2926494/1‑91TCGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTT > 1:2367482/1‑91 CGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTT < 1:1018707/91‑1 CGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTT < 2:1456806/91‑1 GGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTT > 1:1078978/1‑91 GGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTT > 2:2028911/1‑91 GGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTT < 1:2177063/91‑1 GTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTG < 2:3509585/91‑1 GTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTG > 2:2113737/1‑91 TCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAATCAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGT < 2:1659946/91‑1 TCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGT < 2:3679143/91‑1 TCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGT > 2:2413642/1‑91 TCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGT < 1:1896636/91‑1 TCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGT > 2:2413626/1‑91 TCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGT < 1:2405443/91‑1 TCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGT > 2:2363861/1‑91 TCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGT > 2:942187/1‑91 TCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGT < 2:841890/91‑1 TCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGT < 2:1906987/91‑1 TCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGT < 2:1010716/91‑1 TCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGT > 1:3869581/1‑91 TCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTGTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGT < 2:841913/91‑1 CGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTT > 1:1987544/1‑91 CGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTT < 2:2370768/91‑1 GGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT < 1:2097104/91‑1 GGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT > 2:3754598/1‑91 GGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT > 2:759425/1‑91 GGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT < 2:3046948/91‑1 GGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT < 2:1547509/91‑1 GGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT > 2:2498363/1‑91 GGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT < 1:42792/91‑1 cCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGCCCCGTAATCACGGAACTC‑TTTTGTTTGGTAATGCGTAT < 2:918778/90‑1 CGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTA > 1:577912/1‑91 CGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTA > 1:577922/1‑91 CAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGAC > 1:3694332/1‑91 AAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCG > 1:2395719/1‑91 AAGAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGA > 2:2788592/1‑91 AGAGTTCCGTGATTACGGGGCTC‑TTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATG > 1:2893671/1‑91 GAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATG > 1:3674905/1‑91 GAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATG > 1:1393607/1‑91 AGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGT < 2:1843966/60‑1 AGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGT > 1:1843966/1‑60 GTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGC > 1:2715586/1‑91 GTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGC > 2:2315451/1‑91 TTCCGTGATTACGGGGCTC‑TTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTT > 2:3093892/1‑91 TTCCGTGATTACGGGGCTC‑TTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTT > 2:992945/1‑91 CGTGATTACGGGGCTC‑TTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGA > 2:1759790/1‑91 GTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGA > 1:3184624/1‑91 GTGATTACGGGGCTC‑TTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAA > 1:565226/1‑91 GCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCT > 1:76584/1‑91 TTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCA > 1:2109818/1‑91 TGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAG < 2:3566981/91‑1 TGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAG < 1:136394/91‑1 TGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAG < 1:3081803/91‑1 GTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCGTTGCTCTATCCAGC < 2:3296914/91‑1 GTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCGTTGCTCTATCCAGC < 2:3296858/91‑1 GTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGC < 2:3295756/91‑1 GTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGC > 1:1466180/1‑91 GTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGC < 2:1466180/91‑1 GTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGC > 1:2930838/1‑91 GTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGC > 1:2172471/1‑91 TTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTG > 1:1132649/1‑91 TCGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1181938‑1181842‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTG > USA300TCH1516_ALE/1181881‑1181969 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |