BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1181842 =	189 (0.990)	18 (0.110)	13/144	NT	10.7%	intergenic (+409/+65)	USA300HOU_RS05885/USA300TCH1516_01103	hypothetical protein/tRNA‑Arg
*	?	USA300TCH1516_ALE	1181881 =	130 (0.760)	18 (0.110)	13/144	NT	10.7%	intergenic (+448/+26)	USA300HOU_RS05885/USA300TCH1516_01103	hypothetical protein/tRNA‑Arg

Only 100 of 245 total aligned reads displayed.

CGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCC  >  USA300TCH1516_ALE/1181752‑1181932

cGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaa                                                                                            <  2:1238982/91‑1 (MQ=255)

 gAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaaa                                                                                           >  2:2699452/1‑91 (MQ=255)

  aaTAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaaaa                                                                                          >  1:692353/1‑91 (MQ=255)

   gctggatagagcaatggccttctaagccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccaaac                                                                                         >  1:2172471‑M1/88‑91 (MQ=255)

   gctggatagagcaacggccttctaagccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccaaac                                                                                         <  2:3296914‑M1/4‑1 (MQ=255)

    tAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaaaaca                                                                                        <  1:3394413/91‑1 (MQ=255)

    tAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTAATAAAATTaaaaaca                                                                                        <  2:1770197/91‑1 (MQ=255)

     aaGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaaaacaa                                                                                       <  1:1887411/91‑1 (MQ=255)

      aGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaaaacaaa                                                                                      <  2:1645418/91‑1 (MQ=255)

      aGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaaaacaaa                                                                                      >  1:1299970/1‑91 (MQ=255)

       gcgtGCTGGTTTTAATTACGGTGTGTGCGGGGCTGATGCGGGGGACGTTTGGGGGACGCGTCATACTATATGAGTGAGATTgaaagcaaaa                                                                                     <  2:315838/88‑1 (MQ=255)

        cATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACaaaaa                                                                                    >  2:937970/1‑91 (MQ=255)

         aTGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAag                                                                                   >  1:451903/1‑91 (MQ=255)

          tGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATGATACTATATTACTGCAATTCAAAACAAAAaga                                                                                  >  1:3318838/1‑91 (MQ=255)

              tGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGccc                                                                              <  2:2117152/91‑1 (MQ=255)

              tGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGccc                                                                              >  2:628659/1‑91 (MQ=255)

              tGTTTTAATTACTGTATTTTCGGGGCGTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGccc                                                                              <  1:250059/91‑1 (MQ=255)

               gTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGcccc                                                                             <  2:3115872/91‑1 (MQ=255)

               gTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGcccc                                                                             <  2:2719794/91‑1 (MQ=255)

                ttttAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCg                                                                            >  1:1183550/1‑91 (MQ=255)

                 tttAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGt                                                                           >  1:2316321/1‑91 (MQ=255)

                  ttAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTa                                                                          <  1:143819/91‑1 (MQ=255)

                    aaTTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAAt                                                                        <  2:3626393/91‑1 (MQ=255)

                    aaTTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAAt                                                                        >  2:2933204/1‑91 (MQ=255)

                    aaTTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAAt                                                                        <  2:3626349/91‑1 (MQ=255)

                      ttctaagccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAA‑GAGCCCCGTAATCAc                                                                     >  1:565226‑M1/69‑91 (MQ=255)

                       tctaagccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCAc                                                                     >  1:3184624‑M1/68‑91 (MQ=255)

                       tACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCAc                                                                     >  1:3566981/1‑91 (MQ=255)

                        aCTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACg                                                                    >  1:3203653/1‑91 (MQ=255)

                         cTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACgg                                                                   <  1:470745/91‑1 (MQ=255)

                          tGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGa                                                                  <  1:2853753/91‑1 (MQ=255)

                            tATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAAc                                                                >  2:3554984/1‑91 (MQ=255)

                            tATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAAc                                                                <  2:3844177/91‑1 (MQ=255)

                            tATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAAc                                                                <  1:1608048/91‑1 (MQ=255)

                            gccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAAc                                                                >  1:2715586‑M1/63‑91 (MQ=255)

                            gccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAAc                                                                >  2:2315451‑M1/63‑91 (MQ=255)

                             aTTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAACCACGGAAct                                                               >  1:3719458/1‑91 (MQ=255)

                              ttttCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAActc                                                              >  1:2755675/1‑91 (MQ=255)

                              ttttCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAActc                                                              >  2:3081803/1‑91 (MQ=255)

                              ttttCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAActc                                                              <  1:728628/91‑1 (MQ=255)

                              catcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAActc                                                              >  1:3674905‑M1/61‑91 (MQ=255)

                              catcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAActc                                                              >  1:1393607‑M1/61‑91 (MQ=255)

                               tttCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAActct                                                             <  1:2907743/91‑1 (MQ=255)

                               tttCGGGGCTTATGCAGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAActct                                                             <  2:216707/91‑1 (MQ=255)

                                ttCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCtt                                                            <  2:1913394/91‑1 (MQ=255)

                                 tCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCttt                                                           >  1:240358/1‑91 (MQ=255)

                                 tCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCttt                                                           <  1:262083/91‑1 (MQ=255)

                                  cGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCtttt                                                          <  2:1257413/91‑1 (MQ=255)

                                    gggCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgt                                                        >  2:3400779/1‑91 (MQ=255)

                                     ggCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtt                                                       <  2:1842269/91‑1 (MQ=255)

                                     ggCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtt                                                       <  1:1366808/91‑1 (MQ=255)

                                     ggCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtt                                                       >  2:2512075/1‑91 (MQ=255)

                                     ggCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtt                                                       <  1:1207823/91‑1 (MQ=255)

                                      gCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgttt                                                      <  2:423559/91‑1 (MQ=255)

                                       cTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtttg                                                     <  2:317058/91‑1 (MQ=255)

                                        tgaTGCGGGGGACGTTTTGGTGACGCATCATACAATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTgg                                                    <  1:3625978/89‑1 (MQ=255)

                                         tATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGt                                                   <  2:1404141/91‑1 (MQ=255)

                                          aTGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTa                                                  >  2:3722275/1‑91 (MQ=255)

                                          aTGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTa                                                  >  1:1727270/1‑91 (MQ=255)

                                           tGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTaa                                                 <  1:1566205/91‑1 (MQ=255)

                                           tGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTaa                                                 <  1:3833020/91‑1 (MQ=255)

                                            gCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAGACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAAt                                                >  1:3871224/1‑91 (MQ=255)

                                                 ggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGta                                           >  1:299504/1‑91 (MQ=255)

                                                  gACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGtat                                          <  1:1140250/91‑1 (MQ=255)

                                                       tttGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATaaaaa                                     <  1:397712/91‑1 (MQ=255)

                                                         tGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATa                                   >  1:2654456/1‑91 (MQ=255)

                                                         tGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATa                                   <  1:932779/91‑1 (MQ=255)

                                                          ggTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATAc                                  <  2:1883411/91‑1 (MQ=255)

                                                          ggTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATAc                                  >  2:848622/1‑91 (MQ=255)

                                                            acgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAAct                                                               >  1:1843966‑M1/31‑60 (MQ=255)

                                                              aCGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCtat                              >  1:3120282/1‑91 (MQ=255)

                                                               cGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCtata                             <  1:2359934/91‑1 (MQ=255)

                                                               cGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCtata                             <  2:114313/91‑1 (MQ=255)

                                                                  atcatACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAAc                          <  1:3478774/91‑1 (MQ=255)

                                                                   tcatACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACg                         <  2:1902688/91‑1 (MQ=255)

                                                                   tcatACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACg                         <  2:3759936/91‑1 (MQ=255)

                                                                   tcatACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACg                         <  1:1275446/91‑1 (MQ=255)

                                                                   taggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACg                         >  1:577922‑M1/24‑91 (MQ=255)

                                                                    catACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGt                        >  1:3755086/1‑91 (MQ=255)

                                                                      tACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTcc                      <  2:1804816/91‑1 (MQ=255)

                                                                       aCTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCt                     <  2:2488436/91‑1 (MQ=255)

                                                                       aCTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCt                     <  1:3264645/91‑1 (MQ=255)

                                                                         tataTTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgg                   <  2:3083660/91‑1 (MQ=255)

                                                                         tataTTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgg                   <  2:2038460/91‑1 (MQ=255)

                                                                          atatTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTggg                  <  2:3493956/91‑1 (MQ=255)

                                                                           tatTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTggga                 >  2:1019263/1‑91 (MQ=255)

                                                                           tatTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTggga                 >  2:133915/1‑91 (MQ=255)

                                                                           tatTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTggga                 >  1:2113737/1‑91 (MQ=255)

                                                                             ttACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggagg               <  1:11256/91‑1 (MQ=255)

                                                                              atacgcattaccAAACAAAA‑GAGTTCCGTGATTACGGGGCTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCtgggagggg             <  2:918778‑M1/79‑2 (MQ=255)

                                                                                cTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGAt            <  2:2985856/91‑1 (MQ=255)

                                                                                cTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGAt            >  2:3876393/1‑91 (MQ=255)

                                                                                cTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGAt            >  2:1715466/1‑91 (MQ=255)

                                                                                   aaaTTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCg         >  2:2559759/1‑91 (MQ=255)

                                                                                   aaaTTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCg         <  2:195500/91‑1 (MQ=255)

                                                                                     aTTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAACAATACCTATAAACGTCCTGGGAGGGATTCGaa       <  2:773205/91‑1 (MQ=255)

                                                                                     aTTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGaa       <  2:2408260/91‑1 (MQ=255)

                                                                                       tCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAcc     >  1:434985/1‑91 (MQ=255)

                                                                                       tCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAcc     >  2:1545698/1‑91 (MQ=255)

                                                                                         aaaacaaaaAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAcccc   >  2:616280/1‑91 (MQ=255)

CGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCC  >  USA300TCH1516_ALE/1181752‑1181932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.