| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1183556 | 188 (0.990) | 13 (0.080) | 8/140 | NT | 7.3% | intergenic (+67/+42) | yfnB/USA300HOU_RS05910 | Putative HAD‑hydrolase YfnB/putative N‑acetyltransferase |
| ? | USA300TCH1516_ALE | = 1183574 | 168 (1.010) | intergenic (+85/+24) | yfnB/USA300HOU_RS05910 | Putative HAD‑hydrolase YfnB/putative N‑acetyltransferase | |||||
TCATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1183457‑1183556‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacactacgaGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCTTAAC < USA300TCH1516_ALE/1183574‑1183485 TCATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAG > 2:2709707/1‑91TCATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAG > 1:1845435/1‑91TCATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAG > 2:2709911/1‑91 CATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGA > 1:729799/1‑91 CATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGA < 1:3620274/91‑1 CATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGA > 2:1985810/1‑91 CATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGA > 2:2327264/1‑91 CATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGA > 1:729570/1‑91 CATGAAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAACAGA > 1:3059120/1‑91 ATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGAC < 1:158580/91‑1 ATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGAC > 2:3299260/1‑91 TGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACA < 2:1335335/91‑1 TGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACA > 1:1440924/1‑91 GGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACAC < 1:2620697/91‑1 AAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTA < 2:2919077/91‑1 AAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTA > 1:2663763/1‑91 AACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTAC < 2:3465990/91‑1 AACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTAC < 2:3465690/91‑1 AACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTAC > 2:1302363/1‑91 AACAACTAAATGATATTGTACGTTAAGACAAAGAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTAC < 2:3466204/91‑1 ACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACG < 1:1681522/91‑1 ACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAAATGTAAAAAAGACACTACG < 2:308453/91‑1 CAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGA < 2:1743926/91‑1 ATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAA > 1:633617/1‑90 ATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAA < 2:633617/90‑1 GTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTT < 2:1821934/91‑1 GTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTT < 1:3279675/91‑1 GTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTT < 2:1821902/91‑1 GTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTT < 2:3782614/91‑1 GACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGTAG < 1:2909721/91‑1 CAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGTAGTG < 2:551479/91‑1 AATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTC < 1:1485176/91‑1 AATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTC < 1:1485097/91‑1 AATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTT < 1:2699127/91‑1 TGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTA < 1:2921683/91‑1 TGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTA < 1:2921634/91‑1 GACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATT < 2:2655122/91‑1 GACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATT > 2:1258504/1‑91 GACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATT < 1:1687662/91‑1 GACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATT < 2:1737278/91‑1 GACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATT > 1:1409829/1‑91 ACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTT > 1:1874526/1‑91 CACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTG > 2:693202/1‑91 CACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTG > 2:1064048/1‑91 CACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTG < 1:1563397/91‑1 CACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTG > 1:2679111/1‑91 CACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTG > 1:2183167/1‑91 CACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTG > 1:2183180/1‑91 ACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGT > 2:1743711/1‑91 ACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGT < 2:31183/91‑1 ACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTGCAAATTATTTGT < 1:2990182/91‑1 CTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTC < 1:1286602/91‑1 CTACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTC < 1:2435560/91‑1 ACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCTT > 1:1581759/1‑91 ACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCTT > 1:2745346/1‑91 ACGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCTT < 1:1406915/91‑1 CGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCTTA > 1:1979387/1‑91 CGAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCTTA > 2:1544008/1‑91 GAGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCTTAA > 1:1519505/1‑91 AGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCTTAAC > 2:3319258/1‑91 TCATGGAAACAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1183457‑1183556‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacactacgaGCATGAAAATGCATCTTTTCGTAGTGTCTTTTTTACAATTACTTTCTTAAGCTAATATAAGTAAATCATTTTCAAATTATTTGTCTTAAC < USA300TCH1516_ALE/1183574‑1183485 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |