| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1183556 | 188 (0.990) | 13 (0.080) | 8/140 | NT | 7.3% | intergenic (+67/+42) | yfnB/USA300HOU_RS05910 | Putative HAD‑hydrolase YfnB/putative N‑acetyltransferase |
| ? | USA300TCH1516_ALE | = 1183574 | 168 (1.010) | intergenic (+85/+24) | yfnB/USA300HOU_RS05910 | Putative HAD‑hydrolase YfnB/putative N‑acetyltransferase | |||||
Only 100 of 318 total aligned reads displayed.
CAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCC > USA300TCH1516_ALE/1183466‑1183646 | atcatggatttacagatgtggaagctaaaaatatagagggacatgatgtcttattgtggaaaccataagataataatattcGACACTACGa > 2:430416‑M1/82‑91 (MQ=255) aacTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGaa > 2:1419167/1‑91 (MQ=255) aacTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGaa > 1:2706042/1‑91 (MQ=255) cTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGaaaa > 2:836724/1‑91 (MQ=255) tAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAg < 2:2008228/91‑1 (MQ=255) aaaTGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGa < 2:3673944/91‑1 (MQ=255) aaTGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGAt > 2:1987724/1‑91 (MQ=255) aaTGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGAt > 1:3533993/1‑91 (MQ=255) aaTGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGAt > 1:2269355/1‑91 (MQ=255) tGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGc > 1:3210451/1‑91 (MQ=255) atatTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCAt > 1:89759/1‑91 (MQ=255) tatTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCAtt < 1:1473797/91‑1 (MQ=255) atTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCAttt > 1:1373525/1‑91 (MQ=255) tGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTc < 1:1049422/91‑1 (MQ=255) tGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTc < 2:1444125/91‑1 (MQ=255) gTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCa < 2:3531145/91‑1 (MQ=255) tggaagctaaaaatatagagggacatgatgtcttattggggaaaccataagataataatattcGACACTACGAAAAGATGCATTTTCATGc > 2:2655739‑M1/64‑91 (MQ=255) cGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGc > 1:601076/1‑91 (MQ=255) ggaagctaaaaatatagagggacatgatgtcttattgtggaaaccataagataataatattcGACACTACGAAAAGATGCATTTTCATGCt > 1:1143174‑M1/63‑91 (MQ=255) ggaagctaaaaatatagagggacatgatgtcttattgtggaaaccataagataataatattcGACACTACGAAAAGATGCATTTTCATGCt > 1:245873‑M1/63‑91 (MQ=255) ttAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCtc > 1:1519505‑M2/1‑89 (MQ=255) gaagctaaaaatatagagggacatgatgtcttattgtggaaaccataagataataatattcGACACTACGAAAAGATGCATTTTCATGCTc > 1:1997205‑M1/62‑91 (MQ=255) agctaaaaatatagagggacatgatgtcttattgtggaaaccataagataataatattcGACACTACGAAAAGATGCATTTTCATGCTCGt > 2:3875338‑M1/60‑91 (MQ=255) aCAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCtcgtagt < 2:31183‑M2/91‑8 (MQ=255) cAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCtcgtagtg > 1:2679111‑M2/1‑83 (MQ=255) aaaTAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCtcgtagtgt > 1:1874526‑M2/1‑82 (MQ=255) aataatTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAgcatgaaaatgcatcttttcgtagtgtc < 1:1485176‑M1/91‑29 (MQ=255) aataatTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCtcgtagtgtc > 1:1409829‑M2/1‑81 (MQ=255) aaatatagagggacatgatgtcttattgtggaaaccataagataataatattcGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTc > 1:3754566‑M1/54‑91 (MQ=255) ataatTTGAAAATGATTTACTTATATTAGCTCAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGACGCATTTTCATGATCGTAGTGTCg > 2:2968124/1‑91 (MQ=255) atTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTCATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAat > 1:3268112/1‑91 (MQ=255) atTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAat < 1:2600138/91‑1 (MQ=255) atTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAat < 2:1907725/91‑1 (MQ=255) atTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAat < 2:3781538/91‑1 (MQ=255) tttGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAata > 2:70272/1‑91 (MQ=255) tttGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAata < 2:327198/91‑1 (MQ=255) tGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAgcatgaaaatgcatcttttcgtagtgtctttttta < 1:2921683‑M1/91‑36 (MQ=255) gAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtatta > 2:1073696/1‑91 (MQ=255) gAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtatta > 2:1049682/1‑91 (MQ=255) gAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtatta < 2:2800539/91‑1 (MQ=255) aaaaTGATTTAATTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtattat < 2:223718/91‑1 (MQ=255) aaaTGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtattatt > 1:2338680/1‑91 (MQ=255) gacatgatgtcttattgtggaaaccataagataataatattcGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtattatta > 1:791951‑M1/43‑91 (MQ=255) aaTGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtattatta < 1:2953256/91‑1 (MQ=255) gATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCt < 2:2523623/91‑1 (MQ=255) gATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCt < 2:2924700/91‑1 (MQ=255) aTTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCtt < 1:3147710/91‑1 (MQ=255) tttACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTa < 1:2849621/91‑1 (MQ=255) tttACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTa < 2:1286602/91‑1 (MQ=255) ttACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTAt < 1:2327264/91‑1 (MQ=255) tACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATg > 2:2100414/1‑91 (MQ=255) aCTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATgg < 1:2411559/91‑1 (MQ=255) aCTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATgg < 1:1641937/91‑1 (MQ=255) ttATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGtt < 2:411900/91‑1 (MQ=255) atatTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTc < 1:2505488/91‑1 (MQ=255) tatTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTcc < 2:1572437/91‑1 (MQ=255) ttAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCcac < 1:3418239/91‑1 (MQ=255) aGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACaa > 2:242032/1‑91 (MQ=255) aGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACaa < 2:93754/91‑1 (MQ=255) aGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACaa < 1:3651441/91‑1 (MQ=255) aGAAAGTAATTGTAAAAAAGACACTACGAAAGGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAc > 1:3499065/1‑91 (MQ=255) aaaGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAcat < 2:729570/91‑1 (MQ=255) aaaGTAATTGTAAAAAAGACACTACGAAAAGATGCAGTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAcat < 2:3059120/91‑1 (MQ=255) tGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTccc > 1:1236381/1‑91 (MQ=255) gTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCct < 1:1802523/91‑1 (MQ=255) gTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCct > 2:181876/1‑91 (MQ=255) gTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCct < 1:2795462/91‑1 (MQ=255) tAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCctc < 1:1007569/91‑1 (MQ=255) tAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCctc < 1:1198787/91‑1 (MQ=255) tAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCctc > 2:234081/1‑91 (MQ=255) aaaaaaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCctct > 2:2821876/1‑91 (MQ=255) aaaaaaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCctct < 2:3445326/91‑1 (MQ=255) aaaaaaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCctct < 1:456683/91‑1 (MQ=255) aaaaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCtat > 1:526830/1‑91 (MQ=255) aaaaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCtat > 2:1776706/1‑91 (MQ=255) aaaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCtata < 1:300493/91‑1 (MQ=255) aGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATAtt < 1:2035867/91‑1 (MQ=255) gACACTACGAgcatgaaaatgcatcttttcgtagtgtcttttttacaattactttcttaagctaatataagtaaatcattttcaaattatt > 2:1258504‑M1/1‑10 (MQ=255) gACACTACGAgcatgaaaatgcatcttttcgtagtgtcttttttacaattactttcttaagctaatataagtaaatcattttcaaattatt < 2:1737278‑M1/91‑82 (MQ=255) GACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATAttt > 2:1397481‑M1/1‑91 (MQ=255) GACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATAttt > 1:2150997‑M1/1‑91 (MQ=255) ACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATAtttt < 1:1952186‑M1/91‑1 (MQ=255) cacTACGAgcatgaaaatgcatcttttcgtagtgtcttttttacaattactttcttaagctaatataagtaaatcattttcaaattatttg > 1:2183180‑M1/1‑8 (MQ=255) cacTACGAAAAGATGCATTTTCATGCtcgtagtgtcttttttacaattactttcttaagctaatataagtaaatcattttcaaattatttg < 2:551479‑M2/91‑66 (MQ=255) CACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATAttttt < 1:2102304‑M1/91‑1 (MQ=255) CACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATAttttt > 2:3004189‑M1/1‑91 (MQ=255) acTACGAgcatgaaaatgcatcttttcgtagtgtcttttttacaattactttcttaagctaatataagtaaatcattttcaaattatttgt > 2:1743711‑M1/1‑7 (MQ=255) ACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTa < 1:3343846‑M1/91‑1 (MQ=255) cTACGAgcatgaaaatgcatcttttcgtagtgtcttttttacaattactttcttaagctaatataagtaaatcattttcaaattatttgtc < 1:1286602‑M1/91‑86 (MQ=255) cTACGAAAAGATGCATTTTCATGCtcgtagtgtcttttttacaattactttcttaagctaatataagtaaatcattttcaaattatttgtc < 1:2909721‑M2/91‑68 (MQ=255) CTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAg < 1:1669426‑M1/91‑1 (MQ=255) CTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAg < 2:2653959‑M1/91‑1 (MQ=255) aCGAgcatgaaaatgcatcttttcgtagtgtcttttttacaattactttcttaagctaatataagtaaatcattttcaaattatttgtctt > 1:1581759‑M1/1‑4 (MQ=255) aCGAgcatgaaaatgcatcttttcgtagtgtcttttttacaattactttcttaagctaatataagtaaatcattttcaaattatttgtctt < 1:1406915‑M1/91‑88 (MQ=255) aCGAgcatgaaaatgcatcttttcgtagtgtcttttttacaattactttcttaagctaatataagtaaatcattttcaaattatttgtctt > 1:2745346‑M1/1‑4 (MQ=255) ACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCt > 2:665947‑M1/1‑91 (MQ=255) cGAgcatgaaaatgcatcttttcgtagtgtcttttttacaattactttcttaagctaatataagtaaatcattttcaaattatttgtctta > 1:1979387‑M1/1‑3 (MQ=255) cGAgcatgaaaatgcatcttttcgtagtgtcttttttacaattactttcttaagctaatataagtaaatcattttcaaattatttgtctta > 2:1544008‑M1/1‑3 (MQ=255) agcatgaaaatgcatcttttcgtagtgtcttttttacaattactttcttaagctaatataagtaaatcattttcaaattatttgtcttaac > 2:3319258‑M1/1‑1 (MQ=255) aaaaGATGCATTTTCATGCtcgtagtgtcttttttacaattactttcttaagctaatataagtaaatcattttcaaattatttgtcttaac < 2:1821934‑M2/91‑73 (MQ=255) | CAACTAAATGATATTGTACGTTAAGACAAATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCC > USA300TCH1516_ALE/1183466‑1183646 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |