| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1255967 = | 131 (0.690) | 21 (0.130) | 17/134 | NT | 16.6% | intergenic (+183/+61) | rplS/USA300HOU_RS06250 | 50S ribosomal protein L19/hypothetical protein |
| ? | USA300TCH1516_ALE | 1256006 = | 102 (0.640) | intergenic (+222/+22) | rplS/USA300HOU_RS06250 | 50S ribosomal protein L19/hypothetical protein | |||||
TATGTAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1256068‑1255967‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acttagtagatttATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTTATA > USA300TCH1516_ALE/1256006‑1256094 TATGTAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCAC > 1:2776585/1‑91TATGTAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCAC < 2:733292/91‑1 GTAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTA > 1:2460988/1‑91 GTAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTA < 1:2226366/91‑1 GTAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTA < 1:1708129/91‑1 TAGTATTATTTTCGCGAGATGGGCAAGACAAAAATAATGTTGCGACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAG < 1:3882284/91‑1 TAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAG < 2:2787875/91‑1 TAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAG > 1:2401681/1‑91 TAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAG < 1:2139310/91‑1 TAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAG < 1:2139181/91‑1 TAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAG < 2:1333190/91‑1 TAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAG < 1:179316/91‑1 TAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAG < 1:1612480/91‑1 TAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAG < 2:151071/91‑1 TAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAG > 1:1219222/1‑91 AGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGT > 1:3535541/1‑91 AGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGT < 1:2656392/91‑1 AGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGT > 2:2501954/1‑91 AGTACTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGT < 1:3227981/91‑1 GTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTA < 1:345784/91‑1 TATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAG < 1:476147/91‑1 TATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAG < 1:3509275/91‑1 TATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAG < 1:3394100/91‑1 TATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAG < 1:2856261/91‑1 TATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAG < 2:2103877/91‑1 ATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAGA > 1:692200/1‑91 ATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAGA < 1:2953232/91‑1 ATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAGA > 1:549138/1‑91 ATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAGA < 1:151292/91‑1 ATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGA‑CCTTTTCAATGGCACTTAGTAGA < 1:1778842/91‑1 TTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAGAT > 1:2744555/1‑91 TATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAGATT < 1:2405109/91‑1 TATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAGATT < 1:293457/91‑1 TATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAGATT > 1:3396471/1‑91 TATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAGATT < 1:1156448/91‑1 TATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAGATT > 1:1269216/1‑91 TATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAGATT < 1:3867289/91‑1 TATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAGATT < 1:2413351/91‑1 ATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAGATTT < 1:2152110/91‑1 ATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAGATTT < 2:3235129/91‑1 ATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAGATTT < 2:3272457/91‑1 ATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAGATTT < 2:3272837/91‑1 ATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAGATTT < 2:3272861/91‑1 TTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTA < 1:1957092/91‑1 TTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATATAATAAATCTACTAAGT‑GCCATTGAAAAGGACTTAGTAGATTTAT < 1:489563/91‑1 TCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTA < 2:2012233/91‑1 TCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTA < 1:1458272/91‑1 CACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAA < 1:1412674/91‑1 CACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGTGCCATTGAAAAGG‑ACTTAGTAGATTTATTAA < 1:3673499/91‑1 CACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑GCCATTGAAAAGGACTTAGTAGATTTATTAA < 1:3673485/91‑1 ACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑GCCATTGAAAAGGACTTAGTAGATTTATTAAA < 1:2731185/91‑1 AATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTA > 2:2619295/1‑91 CTACTAAGT‑CCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAAGAATA > 1:3233058/1‑91 TACTAAGT‑CCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATAC > 2:1255873/1‑91 ACTAAGT‑CCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACT > 2:1399230/1‑91 ACTAAGT‑CCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACT > 2:1937843/1‑91 ACTAAGT‑CCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACT > 2:1399229/1‑91 CTAAGT‑CCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTA > 2:3762200/1‑91 TAAGT‑CCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTAC > 1:1780300/1‑91 TAAGT‑CCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTAC > 1:740353/1‑91 AAGT‑CCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACA > 2:550797/1‑91 AGT‑CCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACAT > 2:1409979/1‑91 AGT‑CCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACAT > 1:707773/1‑91 AGT‑CCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACAT > 1:707468/1‑91 AGT‑CCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACAT > 2:1604090/1‑91 CCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATA > 1:1220599/1‑91 CCTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATA > 1:106734/1‑91 CTTTTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAA > 1:543615/1‑91 TTCAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGC > 2:3504674/1‑91 CAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTTTTTTTTTTATCTCGTGAAAATAATACTACATATAATGCCA > 2:804783/1‑91 CAATGGCACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCA > 2:142665/1‑91 ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAG < 2:698567/91‑1 ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAG > 2:1756993/1‑91 ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAG < 2:496408/91‑1 ACTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAG > 1:2809065/1‑91 CTTAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGT > 1:2006316/1‑91 TAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAA < 1:1104095/91‑1 TAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAA > 1:1188272/1‑91 TAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAA < 1:2826780/91‑1 TAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAA < 1:1773541/91‑1 TAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAA > 1:2239991/1‑91 TAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAA > 2:295590/1‑91 TAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATG > 2:2927672/1‑78 TAGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATG < 1:2927672/78‑1 AGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAAT < 1:2602349/91‑1 AGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAAT > 1:1964646/1‑91 AGTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAAT < 1:1308327/91‑1 GTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATT < 2:2717880/91‑1 GTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATT < 1:2103877/91‑1 GTAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATT < 2:2372213/91‑1 TAGATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTG > 2:109833/1‑91 GATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTT > 1:2634784/1‑91 GATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTT < 2:3510169/91‑1 GATTTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTT < 2:1543558/91‑1 TTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTTATA < 1:2283017/91‑1 TTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTTATA < 1:1853189/91‑1 TTATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTTATA > 1:401562/1‑91 TATGTAGTATTATTTTCACGAGATGGGCAAGACAAAAATAATGTTGCTACGCATATATTTAATAAATCTACTAAGT‑CCTTTTCAATGGCACTTAGTAGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1256068‑1255967‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acttagtagatttATTAAATATATGCGTAGCAACATTATTTTTGTCTTGCCCATCTCGTGAAAATAATACTACATATAATGCCAAATATAGTAATTGTTATA > USA300TCH1516_ALE/1256006‑1256094 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |