| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1426689 | 10 (0.050) | 11 (0.060) | 7/146 | NT | 54.7% | intergenic (‑420/+552) | pstS/cvfB | Phosphate‑binding protein PstS/Conserved virulence factor B |
| ? | USA300TCH1516_ALE | = 1426728 | NA (NA) | intergenic (‑459/+513) | pstS/cvfB | Phosphate‑binding protein PstS/Conserved virulence factor B | |||||
GCTTCGCTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1426593‑1426689‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccaacACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC < USA300TCH1516_ALE/1426728‑1426639 GCTTCGCTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCAC < 1:457924/91‑1GCTTCGCTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCAC < 2:2709851/91‑1 CTTCGCTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACC > 1:112791/1‑91 CTTCGCTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACC < 2:1415660/91‑1 CTTCGCTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACC > 1:227547/1‑91 CTTCGCTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACC < 2:405898/91‑1 TTCGCTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATATAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCC < 2:3480217/91‑1 CGCTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCA < 1:2653817/91‑1 GCTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAA > 1:288992/1‑91 GCTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAA < 1:2679654/91‑1 GCTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAA > 1:1995582/1‑91 GCTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAA > 2:2759575/1‑91 GCTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCACCCACCACAA > 1:3485433/1‑91 CTTTGCCCGTCTGTCACATTACTGTAAGATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAAC < 2:402306/91‑1 TTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAccc < 2:1730693/91‑4 TATAAATAGAATTTTTGATGACGGGTCCCTTCCGAGGGTGCCGTCTCAGCCACCCCAACACGGAAGCTGACATATAGTCAGCTTACAACAA < 1:3178437/91‑1 ATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGC < 1:1875432/91‑1 TAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCC < 2:1948203/91‑1 TAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCC < 2:456563/91‑1 TAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCC < 1:13677/91‑1 GAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGG < 1:1698041/91‑1 GAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGG < 1:1448261/91‑1 AATTTTTGAGGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCGCCCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGT < 1:3716319/91‑1 ATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTT < 1:2943964/91‑1 ATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTT < 1:2943979/91‑1 TTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCCACACAGAGGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGG < 1:1038593/91‑1 CCCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAA < 1:2872983/91‑1 CCCAACACAGGAGCTGACATATAGTCAGCTGACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAA < 2:951310/91‑1 CCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAA < 2:2335600/91‑1 CCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAA > 2:2095142/1‑91 CCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAA > 2:1556382/1‑91 cgcACACAGAGGCTGACATATAGTCAGCTGACAACGATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAA < 2:2382549/88‑1 CCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAA > 1:3412341/1‑91 CCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAA < 1:2969759/91‑1 CCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAA > 1:2648787/1‑91 CCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAA > 1:93361/1‑91 CCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAA > 2:1219115/1‑91 CCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAA > 1:2648657/1‑91 CCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTGGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAA < 2:3149585/91‑1 CAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAA < 1:3185821/91‑1 CAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAA < 2:3780550/91‑1 CAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAA < 1:2043842/91‑1 CAACACAGAAGCTGACATATAGTCAGCTTACAACAAGGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAA < 1:1174592/91‑1 AACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGCAGGGACCCGTCATCAAAAAT > 2:1124710/1‑91 AACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAAT > 2:793213/1‑91 AACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAAT > 2:2384025/1‑91 AACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAAT > 1:496593/1‑91 ACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATT > 2:1422251/1‑91 ACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATT < 1:1655138/91‑1 ACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATT < 1:2215680/91‑1 ACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATT < 1:833861/91‑1 ACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATT < 2:1907448/91‑1 ACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATT > 2:1265372/1‑91 ACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATT > 2:1421889/1‑91 CACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC > 1:2404837/1‑91 CACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC > 1:2616509/1‑91 CACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC > 2:1661727/1‑91 CACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC > 1:2803157/1‑91 CACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC > 1:3711265/1‑91 CACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC > 1:128165/1‑91 CACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC > 1:128164/1‑91 CACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC > 1:1178528/1‑91 CACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC > 2:704161/1‑91 CACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC > 1:3711209/1‑91 CACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGACTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC > 1:3825002/1‑91 GCTTCGCTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1426593‑1426689‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccaacACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC < USA300TCH1516_ALE/1426728‑1426639 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |