| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1426689 | 10 (0.050) | 11 (0.060) | 7/146 | NT | 54.7% | intergenic (‑420/+552) | pstS/cvfB | Phosphate‑binding protein PstS/Conserved virulence factor B |
| ? | USA300TCH1516_ALE | = 1426728 | NA (NA) | intergenic (‑459/+513) | pstS/cvfB | Phosphate‑binding protein PstS/Conserved virulence factor B | |||||
CTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT > USA300TCH1516_ALE/1426599‑1426779 | cTTTGCCCGTCTGTCACATTACTGTAAGATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAAC < 2:402306‑M1/91‑1 (MQ=255) tttGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAAcc < 2:1575890/91‑1 (MQ=255) tttGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAAcc < 2:3047473/91‑1 (MQ=255) tGCTCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCgg < 1:3106734/91‑1 (MQ=255) tGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCgg < 1:3104766/91‑1 (MQ=39) tGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCgg > 1:1508307/1‑91 (MQ=39) tGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCgg < 2:787615/91‑1 (MQ=39) gCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGc > 1:591181/1‑91 (MQ=39) gCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGc < 2:850739/91‑1 (MQ=39) cccGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGca < 2:1568931/91‑1 (MQ=39) cccGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGca > 1:2354396/1‑91 (MQ=39) cGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGcaca > 1:1095979/1‑91 (MQ=37) gTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACAt < 1:1846537/91‑1 (MQ=35) gTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACAt > 1:1989237/1‑91 (MQ=35) gTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACAt < 1:2759575/91‑1 (MQ=35) cTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACAttg < 2:2900135/91‑1 (MQ=33) gTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACAttgtt < 1:2099303/91‑1 (MQ=32) tCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACAttgttg < 2:780532/91‑1 (MQ=31) tCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACAttgttg < 2:916762/91‑1 (MQ=31) tCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACAttgttg > 2:34353/1‑91 (MQ=31) tCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACAttgttg < 2:1989237/91‑1 (MQ=31) tataAATAGAATTTTTGATGACGGGTCCCTTCCGAGGGTGCCGTCTCAGCCACCCCAACacggaagctgacatatagtcagcttacaacaa < 1:3178437‑M1/91‑33 (MQ=255) aTAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACacagaagctgacatatagtcagcttacaacaatgtgc < 1:1875432‑M1/91‑38 (MQ=255) tAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACacagaagctgacatatagtcagcttacaacaatgtgcc < 2:1948203‑M1/91‑39 (MQ=255) tAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACacagaagctgacatatagtcagcttacaacaatgtgcc < 2:456563‑M1/91‑39 (MQ=255) tAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACacagaagctgacatatagtcagcttacaacaatgtgcc < 1:13677‑M1/91‑39 (MQ=255) gAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACacagaagctgacatatagtcagcttacaacaatgtgccgg < 1:1448261‑M1/91‑41 (MQ=255) gAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACacagaagctgacatatagtcagcttacaacaatgtgccgg < 1:1698041‑M1/91‑41 (MQ=255) aaTTTTTGAGGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCGCCCCAACacagaagctgacatatagtcagcttacaacaatgtgccggt < 1:3716319‑M1/91‑42 (MQ=255) aTTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACacagaagctgacatatagtcagcttacaacaatgtgccggtt < 1:2943979‑M1/91‑43 (MQ=255) aTTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACacagaagctgacatatagtcagcttacaacaatgtgccggtt < 1:2943964‑M1/91‑43 (MQ=255) tttGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCCACacagaggctgacatatagtcagcttacaacaatgtgccggttggg < 1:1038593‑M1/91‑46 (MQ=255) ccccAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaa < 1:2872983‑M1/91‑85 (MQ=255) cccAACacaggagctgacatatagtcagctgacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaa < 2:951310‑M1/91‑86 (MQ=255) cccAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaa < 2:2335600‑M1/91‑86 (MQ=255) cccAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaa > 2:2095142‑M1/1‑6 (MQ=255) cccAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaa > 2:1556382‑M1/1‑6 (MQ=255) cgcacacagaggctgacatatagtcagctgacaacgatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaa < 2:2382549‑M1/88‑87 (MQ=255) ccAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaa > 1:2648657‑M1/1‑5 (MQ=255) ccAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaa < 1:2969759‑M1/91‑87 (MQ=255) ccAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaa > 1:2648787‑M1/1‑5 (MQ=255) ccAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaa > 2:1219115‑M1/1‑5 (MQ=255) ccAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaa > 1:93361‑M1/1‑5 (MQ=255) ccAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaa > 1:3412341‑M1/1‑5 (MQ=255) ccAACacagaagctgacatatagtcagcttacaacaatgtgccggtgggggtggctgagacggcaccctaggaagggacccgtcatcaaaa < 2:3149585‑M1/91‑87 (MQ=255) cAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaa < 1:3185821‑M1/91‑88 (MQ=255) cAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaa < 1:2043842‑M1/91‑88 (MQ=255) cAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaa < 2:3780550‑M1/91‑88 (MQ=255) cAACacagaagctgacatatagtcagcttacaacaaggtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaa < 1:1174592‑M1/91‑88 (MQ=255) aaCacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggcagggacccgtcatcaaaaat > 2:1124710‑M1/1‑3 (MQ=255) aaCacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaat > 2:793213‑M1/1‑3 (MQ=255) aaCacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaat > 1:496593‑M1/1‑3 (MQ=255) aaCacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaat > 2:2384025‑M1/1‑3 (MQ=255) acacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaatt > 2:1265372‑M1/1‑2 (MQ=255) acacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaatt < 1:1655138‑M1/91‑90 (MQ=255) acacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaatt < 1:2215680‑M1/91‑90 (MQ=255) acacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaatt < 1:833861‑M1/91‑90 (MQ=255) acacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaatt < 2:1907448‑M1/91‑90 (MQ=255) acacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaatt > 2:1422251‑M1/1‑2 (MQ=255) acacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaatt > 2:1421889‑M1/1‑2 (MQ=255) cacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaattc > 1:2616509‑M1/1‑1 (MQ=255) cacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaattc > 1:2404837‑M1/1‑1 (MQ=255) cacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaattc > 1:3711265‑M1/1‑1 (MQ=255) cacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaattc > 2:1661727‑M1/1‑1 (MQ=255) cacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaattc > 1:2803157‑M1/1‑1 (MQ=255) cacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaattc > 2:704161‑M1/1‑1 (MQ=255) cacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaattc > 1:128165‑M1/1‑1 (MQ=255) cacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaattc > 1:128164‑M1/1‑1 (MQ=255) cacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaattc > 1:1178528‑M1/1‑1 (MQ=255) cacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaattc > 1:3711209‑M1/1‑1 (MQ=255) cacagaagctgacatatagtcagcttacaacaatgtgccggttggggtgactgagacggcaccctaggaagggacccgtcatcaaaaattc > 1:3825002‑M1/1‑1 (MQ=255) | CTTTGCCCGTCTGTCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT > USA300TCH1516_ALE/1426599‑1426779 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |