| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1525192 = | 179 (0.940) | 11 (0.070) | 7/138 | NT | 6.8% | intergenic (‑265/+57) | asnS/dinG_1 | Asparagine‑‑tRNA ligase/putative ATP‑dependent helicase DinG |
| ? | USA300TCH1516_ALE | 1525239 = | 149 (0.910) | intergenic (‑312/+10) | asnS/dinG_1 | Asparagine‑‑tRNA ligase/putative ATP‑dependent helicase DinG | |||||
GTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1525291‑1525192‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaagaattttACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAA > USA300TCH1516_ALE/1525239‑1525328 GTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTAC < 2:1415791/91‑1 TTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACA > 2:1642181/1‑91 TTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAA < 1:1145237/91‑1 TGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAG > 1:543234/1‑91 TGGAAAATTATTAAAACAAAAAAAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAG < 2:2009365/91‑1 GGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGA < 2:1408149/91‑1 GGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGA < 2:2494180/91‑1 GAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAA > 2:2926045/1‑91 GAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAA > 1:587571/1‑91 GAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAA > 2:2100350/1‑91 GAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAA > 2:2100393/1‑91 AAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTTTTACAAGAAT > 2:3696594/1‑91 AAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAAT > 2:1064335/1‑91 AAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAAT > 2:2558600/1‑91 AAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATT < 1:2673510/91‑1 AAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATT < 1:2672055/91‑1 AAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATT < 2:313696/91‑1 AAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATT < 1:1595753/91‑1 ATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTT < 1:583227/91‑1 ATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTT < 1:741432/91‑1 ATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTT < 1:583167/91‑1 ATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTT < 1:3795442/91‑1 ATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAAGTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTT < 1:188377/91‑1 ATTATTAACACAAATTCAAAAAAAGAAAAAGAGAAATACAAAGTAAAATTCTTGTGACATGACATGAGCTATGTTCTGTTACAAGAATTTT < 1:188556/91‑1 AAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATT > 2:3561032/1‑83 AAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATT < 1:3561032/83‑1 CAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTT > 1:3410667/1‑91 AAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAA > 1:485791/1‑91 AAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAA > 1:485792/1‑91 AAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTATTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAA > 1:3280764/1‑91 GTAAAATTCTTGTGACATGACATGTGCTATGTTATGTTACAAGAATTTTACTTTGTATTTCACTTTTTATTTTTTTTAATTTGTCTTAATA > 2:1026803/1‑91 TTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTC > 1:2040789/1‑91 TTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTC > 1:66328/1‑91 TTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTC > 1:1476210/1‑91 TTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTTAATTTGTCTTAATAATTTTCCAA > 2:1416132/1‑91 TGACATGACATGTGCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACT > 1:961786/1‑91 GACATGTGCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAA > 1:3507016/1‑91 ACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGA > 1:205261/1‑91 ACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGA > 2:2451733/1‑91 CAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTTTATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGAT > 2:3693763/1‑91 CAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGAT < 2:543532/91‑1 CAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGAT > 2:3774132/1‑91 CAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGAT > 1:1198773/1‑91 CAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGAT < 1:1750433/91‑1 CAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGAT < 1:2897440/91‑1 CAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGAT < 1:2897524/91‑1 AAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATA > 2:3638166/1‑91 AGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAA < 2:2577743/91‑1 GAATTTTACTTTGTATTTCACTTTTTCTTTTTTTTTATTTTTTTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAAT > 2:2513487/1‑91 GAATTTTACTTTGTATTACACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCACACTGTTGAATGTCTCCTTTTTTCTGACGATAAT > 2:2596667/1‑91 AATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATT < 2:1650659/91‑1 ATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTT > 2:3111709/1‑91 ATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTT > 1:2635436/1‑91 TTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATACTTTT > 2:3150515/1‑91 TTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTT < 2:1946445/91‑1 TTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTT > 1:1029219/1‑91 TTTACGTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCGTAATAATTTTCCATACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTC < 1:3612973/91‑1 TTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCA > 2:269978/1‑91 TTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCA < 2:2815575/91‑1 TTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCA > 1:3470736/1‑91 TTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCA < 2:3007224/91‑1 TTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCA > 1:1612143/1‑91 TTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCA > 1:1612031/1‑91 TTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCA < 2:1894167/91‑1 TTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCA > 2:3692935/1‑91 TTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCA > 1:3470926/1‑91 TTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCA > 1:444239/1‑91 TACTTTGTATTTCACTTTTTCTTTTTTTTTATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAA > 2:1835901/1‑91 TACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAA > 2:2316820/1‑91 TACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAA > 2:3562683/1‑91 TACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAAATTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAA < 1:3079642/91‑1 GTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1525291‑1525192‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaagaattttACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAA > USA300TCH1516_ALE/1525239‑1525328 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |