| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1611382 = | 181 (0.950) | 10 (0.060) | 5/148 | NT | 5.7% | coding (197/726 nt) | srrA | Transcriptional regulatory protein SrrA |
| ? | USA300TCH1516_ALE | 1611415 = | 166 (0.940) | coding (164/726 nt) | srrA | Transcriptional regulatory protein SrrA | |||||
GGCCAAGAGGCTTATGAACTTGCAATGGAGAATAATTATGCTTGCATACTACTAGATTTAATGTTGCCTGAAATGGATGGTATCCAGGTGGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1611476‑1611382‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaacATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTCAAAAGAT > USA300TCH1516_ALE/1611415‑1611504 GGCCAAGAGGCTTATGAACTTGCAATGGAGAATAATTATGCTTGCATACTACTAGATTTAATGTTGCCTGAAATGGATGGTATCCAGGTGG > 1:1209804/1‑91GGCCAAGAGGCTTATGAACTTGCAATGGAGAATAATTATGCTTGCATACTACTAGATTTAATGTTGCCTGAAATGGATGGTATCCAGGTGG > 2:1047105/1‑91GGCCAAGAGGCTTATGAACTTGCAATGGAGAATAACTATGCTTGCATACTACTAGATTTAATGTTGCCTGAAATGGATGGTATCCAGGTGG > 2:2022957/1‑91 GCCAAGAGGCTTATGAACTTGCAATGGAGAATAATTATGCTTGCATACTACTAGATTTAATGTTGCCTGAAATGGATGGTATCCAGGTGGC > 2:1458269/1‑91 GCCAAGAGGCTTATGAACTTGCAATGGAGAATAATTATGCTTGCATACTACTAGATTTAATGTTGCCTGAAATGGATGGTATCCAGGTGGC < 2:1251238/91‑1 CCAAGAGGCTTATGAACTTGCAATGGAGAATAATTATGCTTGCATACTACTAGATTTAATGTTGCCTGAAATGGATGGTATCCAGGTGGCA > 2:2235564/1‑91 CCAAGAGGCTTATGAACTTGCAATGGAGAATAATTATGCTTGCATACTACTAGATTTAATGTTGCCTGAAATGGATGGTATCCAGGTGGCA > 2:115105/1‑91 CCAAGAGGCTTATGAACTTGCAATGGAGAATAATTATGCTTGCATACTACTAGATTTAATGTTGCCTGAAATGGATGGTATCCAGGTGGCA > 1:420756/1‑91 CCAAGAGGCTTATGAACTTGCAATGGAGAATAATTATGCTTGCATACTACTAGATTTAATGTTGCCTGAAATGGATGGTATCCAGGTGGCA > 1:2651410/1‑91 CCAAGAGGCTTATGAACTTGCAATGGAGAATAATTATGCTTGCATACTACTAGATTTAATGTTGCCTGAAATGGATGGTATCCAGGTGGCA > 2:3323118/1‑91 CAAGAGGCTTATGAACTTGCAATGGAGAATAATTATGCTTGCATACTACTAGATTTAATGTTGCCTGAAATGGATGGTATCCAGGTGGCAA < 2:2126106/91‑1 CAAGAGGCTTATGAACTTGCAATGGAGAATAATTATGCTTGCATACTACTAGATTTAATGTTGCCTGAAATGGATGGTATCCAGGTGGCAA < 1:1041245/91‑1 AAGAGGCTTATGAACTTGCAATGGAGAATAATTATGCTTGCATACTACTAGATTTAATGTTGCCTGAAATGGATGGTATCCAGGTGGCAAC > 2:3217387/1‑91 AAGAGGCTTATGAACTTGCAATGGAGAATAATTATGCTTGCATACTACTAGATTTAATGTTGCCTGAAATGGATGGTATCCAGGTGGCAAC < 1:1879895/91‑1 AAGAGGCTTATGAACTTGCAATGGAGAATAATTATGCTTGCATACTACTAGATTTAATGTTGCCTGAAATGGATGGTATCCAGGTGGCAAC > 2:3216122/1‑91 AAGAGGCTTATGAACTTGCAATGGAGAATAATTATGCTTGCATACTACTAGATTTAATGTTGCCTGAAACGGATGGTATCCAGGTCGCAAC < 2:623628/91‑1 GTTGCCTGAAATGGATGGTATCCAGGTGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTT > 1:3506680/1‑91 GTTGCCTGAAATGGATGGTATCCAGGTGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTT > 1:1699505/1‑91 GCCTGAAATGGATGGTATCCAGGTGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGC > 2:306656/1‑91 CCTGAAATGGATGGTATCCAGGTGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCC > 1:3188505/1‑91 CCTGAAATGGATGGTATCCAGGTGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCC > 1:3188392/1‑91 TGAAATGGATGGTATCCAGGTGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCAT > 1:1723780/1‑91 GAAATGGATGGTATCCAGGTGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATT > 2:3342239/1‑91 GAAATGGATGGTATCCAGGTGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATT > 2:2157302/1‑91 GAAATGGATGGTATCCAGGTGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATT > 2:2157641/1‑91 GAAATGGATGGTATCCAGGTGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCAATTGCAAGTTCATAAGCATCTTGGCCATT > 2:413589/1‑91 GGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTCAA > 2:1310074/1‑91 GCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTCAAA < 2:2637695/91‑1 GCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTCAAA < 2:2637898/91‑1 GCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTCAAA < 1:2910198/91‑1 CAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTCAAAA > 1:961613/1‑91 CAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTCAAAA > 2:3667228/1‑91 CAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTT‑GCCATTACTTGCTTCATGGATTTCAAAAG < 2:3271265/91‑1 AACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTCAAAAG < 1:2042420/91‑1 AACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTCAAAAG < 1:2041065/91‑1 AACATTAAATCTAGTAGTATGCAAGCATAACTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTCAAAAG < 2:734258/91‑1 CATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTCAAAAGAT < 2:145786/91‑1 CATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTCAAAAGAT < 1:2341835/91‑1 GGCCAAGAGGCTTATGAACTTGCAATGGAGAATAATTATGCTTGCATACTACTAGATTTAATGTTGCCTGAAATGGATGGTATCCAGGTGGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1611476‑1611382‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaacATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTCAAAAGAT > USA300TCH1516_ALE/1611415‑1611504 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |