BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1611382 =	181 (0.950)	10 (0.060)	5/148	NT	5.7%	coding (197/726 nt)	srrA	Transcriptional regulatory protein SrrA
*	?	USA300TCH1516_ALE	1611415 =	166 (0.940)	10 (0.060)	5/148	NT	5.7%	coding (164/726 nt)	srrA	Transcriptional regulatory protein SrrA

Only 100 of 223 total aligned reads displayed.

TCTTCACCTTTAGCAGTCAACATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTCAAAAGAT  >  USA300TCH1516_ALE/1611325‑1611504

tcttcACCTTTAGCAGTCAACATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACa                                                                                           <  1:2503150/91‑1 (MQ=255)

tcttcACCTTTAGCAGTCAACATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACa                                                                                           <  1:2611066/91‑1 (MQ=255)

 cttcACCTTTAGCAGTCAACATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACAt                                                                                          <  1:2820432/91‑1 (MQ=255)

 cttcACCTTTAGCAGTCAACATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACAt                                                                                          <  1:2077684/91‑1 (MQ=255)

    cACCTTTAGCAGTCAACATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTaa                                                                                       <  2:789286/91‑1 (MQ=255)

      ccTTTAGCAGTCAACATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAAt                                                                                     >  1:1165681/1‑91 (MQ=255)

      ccTTTAGCAGTCAACATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAAt                                                                                     >  1:2364337/1‑91 (MQ=255)

         ttAGCAGTCAACATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCta                                                                                  <  1:3175351/91‑1 (MQ=255)

           aGCAGTCAACATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCtagt                                                                                >  2:306175/1‑91 (MQ=255)

           aGCAGTCAACATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATCAACTCttgt                                                                                >  1:3709972/1‑91 (MQ=255)

             cAGTCAACATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCtagtag                                                                              >  2:3086072/1‑91 (MQ=255)

             cAGTCAACATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCtagtag                                                                              >  2:3085699/1‑91 (MQ=255)

              aGTCAACATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTagtagt                                                                             >  2:1894865/1‑91 (MQ=255)

              aGTCAACATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTagtagt                                                                             >  2:2133644/1‑91 (MQ=255)

               gTCAACATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAACACTAgtagta                                                                            >  1:1010948/1‑91 (MQ=255)

                tCAACATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTAt                                                                           >  1:2303623/1‑91 (MQ=255)

                 cAACATAATAATCGGTGTTTGTTTATCTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATg                                                                          >  2:2208536/1‑91 (MQ=255)

                  aaCATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGc                                                                         >  2:3251401/1‑91 (MQ=255)

                  aaCATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGc                                                                         <  1:2945133/91‑1 (MQ=255)

                   aCATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAATAGTATGCa                                                                        <  2:227789/91‑1 (MQ=255)

                    cATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCaa                                                                       >  1:3360901/1‑91 (MQ=255)

                     ataataATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAg                                                                      >  1:2566211/1‑91 (MQ=255)

                       aataatCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCa                                                                    >  2:2901111/1‑91 (MQ=255)

                         taatCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGCTACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATa                                                                  <  2:3486614/91‑1 (MQ=255)

                         taatCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATa                                                                  <  2:1597404/91‑1 (MQ=255)

                         taatCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATa                                                                  <  2:2455261/91‑1 (MQ=255)

                         taatCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATa                                                                  >  1:3880239/1‑91 (MQ=255)

                           atCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAat                                                                >  1:2485180/1‑91 (MQ=255)

                           atCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAat                                                                >  1:2316558/1‑91 (MQ=255)

                           atCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAat                                                                >  1:1942/1‑91 (MQ=255)

                            tCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAatt                                                               <  2:3532713/91‑1 (MQ=255)

                            tCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAatt                                                               >  1:1321132/1‑91 (MQ=255)

                             cGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAatta                                                              <  1:114824/91‑1 (MQ=255)

                                tgtttgttTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATtc                                                           >  1:3416066/1‑91 (MQ=255)

                                 gtttgtttATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATtct                                                          >  2:1422999/1‑91 (MQ=255)

                                   ttgtttATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTcc                                                        >  1:1132302/1‑91 (MQ=255)

                                     gtttATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCAt                                                      <  1:472761/91‑1 (MQ=255)

                                     gtttATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCAt                                                      >  1:2968395/1‑91 (MQ=255)

                                        tATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGc                                                   >  1:3343608/1‑91 (MQ=255)

                                        tATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGc                                                   <  2:456811/91‑1 (MQ=255)

                                         aTGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCa                                                  <  1:1797789/91‑1 (MQ=255)

                                         aTGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCa                                                  <  2:2496858/91‑1 (MQ=255)

                                          tGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCaa                                                 >  2:2304332/1‑91 (MQ=255)

                                          tGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCaa                                                 <  1:347763/91‑1 (MQ=255)

                                           gTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAg                                                <  2:3343608/91‑1 (MQ=255)

                                           gTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAg                                                >  1:191102/1‑91 (MQ=255)

                                                   aaTTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAg                                        <  1:1704823/91‑1 (MQ=255)

                                                    aTTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGc                                       >  2:2322821/1‑91 (MQ=255)

                                                    aTTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGc                                       >  2:1157858/1‑91 (MQ=255)

                                                     tttAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGcc                                      >  2:747749/1‑91 (MQ=255)

                                                     tttAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGcc                                      <  1:2869880/91‑1 (MQ=255)

                                                     tttAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGcc                                      >  2:2651410/1‑91 (MQ=255)

                                                        aGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCctct                                   >  2:3279310/1‑91 (MQ=255)

                                                        aGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCctct                                   >  2:1970669/1‑91 (MQ=255)

                                                         GTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCtt                                  >  2:3217387‑M1/1‑91 (MQ=255)

                                                         GTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCtt                                  <  1:1879895‑M1/91‑1 (MQ=255)

                                                          TTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTg                                 <  2:2126106‑M1/91‑1 (MQ=255)

                                                           TGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTgg                                >  2:2235564‑M1/1‑91 (MQ=255)

                                                            GCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGc                               >  2:1458269‑M1/1‑91 (MQ=255)

                                                             cctgaaatggatggtatccaggtggcaacATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGcc                              >  1:3188505‑M2/30‑91 (MQ=255)

                                                             CCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAGTTATTCTCCATTGCAAGTTCATAAGCCTCTTGGcc                              >  2:2022957‑M1/1‑91 (MQ=255)

                                                             CCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGcc                              >  2:1047105‑M1/1‑91 (MQ=255)

                                                                gaaatggatggtatccaggtggcaacATTAAATCTAGTAGTATGCAAGCATAATTATTCTCAATTGCAAGTTCATAAGCATCTTGGCCAtt                           >  2:413589‑M2/27‑91 (MQ=255)

                                                                ccTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCAtt                           <  1:2341157/91‑1 (MQ=255)

                                                                ccTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCAtt                           <  1:2340533/91‑1 (MQ=255)

                                                                ccTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATGGCAAGTGCATAAGCGTCATGGCCAtt                           >  2:2738319/1‑91 (MQ=255)

                                                                  tGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTAc                         <  1:930271/91‑1 (MQ=255)

                                                                  tGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTAc                         >  1:438774/1‑91 (MQ=255)

                                                                  tGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTAc                         <  1:2908525/91‑1 (MQ=255)

                                                                   ggATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACt                        >  1:3175558/1‑91 (MQ=255)

                                                                   ggATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACt                        >  2:2992616/1‑91 (MQ=255)

                                                                    gATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACtt                       <  1:306175/91‑1 (MQ=255)

                                                                     aTACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTg                      <  2:1239386/91‑1 (MQ=255)

                                                                     aTACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTg                      >  1:3776940/1‑91 (MQ=255)

                                                                      tACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTgg                                >  2:3201500/1‑80 (MQ=255)

                                                                      tACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGc                     <  1:817669/91‑1 (MQ=255)

                                                                      tACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGc                     >  1:2415556/1‑91 (MQ=255)

                                                                       aCCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCt                    <  2:3054997/91‑1 (MQ=255)

                                                                       aCCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCt                    >  1:968328/1‑91 (MQ=255)

                                                                        ccatccatTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCtt                   <  1:15380/91‑1 (MQ=255)

                                                                        ccatccatTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCtt                   >  1:1856884/1‑91 (MQ=255)

                                                                        ccatccatTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCtt                   <  1:14522/91‑1 (MQ=255)

                                                                         tatccatTTCAGGCAACATTAAATCTAGTAGTATGCTAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTc                  <  2:3841441/90‑1 (MQ=255)

                                                                         catccatTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTc                  >  1:3764569/1‑91 (MQ=255)

                                                                           tccatTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCAt                <  2:1364597/91‑1 (MQ=255)

                                                                            ccatTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATg               >  1:1275505/1‑91 (MQ=255)

                                                                            ccatTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATg               <  1:63672/91‑1 (MQ=255)

                                                                             catTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATgg              >  2:810357/1‑91 (MQ=255)

                                                                             catTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATgg              >  2:361684/1‑91 (MQ=255)

                                                                             catTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATgg              >  1:3525723/1‑91 (MQ=255)

                                                                             catTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATgg              >  2:1519611/1‑91 (MQ=255)

                                                                                ttCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGAtt           >  2:641215/1‑91 (MQ=255)

                                                                                  cAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTc         >  2:3668644/1‑91 (MQ=255)

                                                                                  cAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTc         >  2:1741014/1‑91 (MQ=255)

                                                                                  cAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTc         >  2:463070/1‑91 (MQ=255)

                                                                                   aGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTCa        <  2:2575076/91‑1 (MQ=255)

                                                                                    ggcaacATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTCaa       >  2:1310074‑M2/7‑91 (MQ=255)

                                                                                     gcaacATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTCaaa      <  2:2637898‑M2/86‑1 (MQ=255)

                                                                                      caacATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTCaaaa     >  1:961613‑M2/5‑91 (MQ=255)

                                                                                       aacATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTCAAAAg    <  1:2041065‑M2/88‑1 (MQ=255)

TCTTCACCTTTAGCAGTCAACATAATAATCGGTGTTTGTTTATGTTCACGCAATTTAGTTGCCACCTGGATACCATCCATTTCAGGCAACATTAAATCTAGTAGTATGCAAGCATAATTATTCTCCATTGCAAGTTCATAAGCCTCTTGGCCATTACTTGCTTCATGGATTTCAAAAGAT  >  USA300TCH1516_ALE/1611325‑1611504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.