| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1732959 = | 126 (0.660) | 11 (0.070) | 7/136 | NT | 8.2% | intergenic (+145/+92) | limB_2/USA300HOU_RS08645 | Limonene 1,2‑monooxygenase/hypothetical protein |
| ? | USA300TCH1516_ALE | 1733016 = | 139 (0.860) | intergenic (+202/+35) | limB_2/USA300HOU_RS08645 | Limonene 1,2‑monooxygenase/hypothetical protein | |||||
AGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1733060‑1732959‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATAT > USA300TCH1516_ALE/1733016‑1733105 AGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGTGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAG < 2:829051/91‑1AGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAG > 1:2646212/1‑91 GAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGG > 2:892461/1‑91 GAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGG > 2:1149142/1‑91 GAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGG > 2:1149591/1‑91 AGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGG < 1:2940598/91‑1 AGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGG < 1:2758043/91‑1 AGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGG > 2:3849742/1‑91 GAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGG > 1:2934822/1‑91 AAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGC > 1:3846131/1‑91 AATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCG < 1:2697640/91‑1 ATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGC < 2:752100/91‑1 ATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGC < 2:745392/91‑1 TAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCT < 1:17878/91‑1 TAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCT < 1:145102/91‑1 TAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCT > 1:1453714/1‑91 TAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCT > 2:145102/1‑91 TAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCT < 2:2044521/91‑1 TAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCT > 1:1612413/1‑91 AAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTT > 1:2244697/1‑91 AAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTT < 2:2095874/91‑1 AATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTT < 2:1683004/91‑1 AATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTT < 2:2561541/91‑1 AATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTT < 1:1128326/91‑1 AATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTT > 1:541337/1‑91 ATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTC > 2:2639012/1‑91 ATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTC > 1:309446/1‑91 TTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCA < 1:3852064/91‑1 TTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCA < 1:2395390/91‑1 TTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCA < 1:3852482/91‑1 TTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCA < 1:436017/91‑1 AAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATT > 1:2838673/1‑91 CCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTC > 1:1094435/1‑91 CCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTC > 1:791482/1‑91 CATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCT > 1:1026283/1‑91 CATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCT > 1:3371383/1‑91 CATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCT > 1:3771995/1‑91 ATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTT > 1:2134688/1‑91 TCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTT > 2:1922168/1‑91 ATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCT > 2:845697/1‑91 ATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCT > 2:845685/1‑91 GTAAAGTTGAAGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTC < 2:1026283/91‑1 GGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCG < 2:3170302/91‑1 GGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCG < 2:3170513/91‑1 GGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGt > 2:2748302/1‑90 GGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGA > 2:2706943/1‑91 GGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGA < 2:1577987/91‑1 GGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGA > 2:2748277/1‑91 GGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGAT > 1:2747727/1‑91 GCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATC > 2:2651878/1‑91 GCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATC < 2:2222439/91‑1 GCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATC < 2:2222341/91‑1 GCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATC > 2:2884915/1‑91 GCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATC > 2:1092505/1‑91 GCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATC < 2:3347653/91‑1 GCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATC > 1:1487434/1‑91 GCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATC > 1:766733/1‑91 GCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATC < 1:655159/91‑1 GCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATC > 2:756339/1‑91 GCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATC > 1:361718/1‑91 CGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCC < 1:1878683/91‑1 CGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCC < 1:1023658/91‑1 CGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCC > 1:2240627/1‑91 CGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCC > 1:649225/1‑91 GCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCT < 1:1469132/91‑1 GCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCT < 1:1469320/91‑1 CTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTG < 1:3859158/91‑1 CTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTG > 1:2467709/1‑91 CTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTG > 1:2467724/1‑91 CTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTG > 2:464724/1‑91 CTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTG < 2:1016487/91‑1 TTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGT > 2:1089767/1‑91 TTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGT > 1:1618438/1‑91 TTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTA < 2:186892/91‑1 TTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTA > 1:2417713/1‑91 TCAAAATATTGAAAAGTATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCAATTTCTTTTTTCTCTTCGTTATTCGATCCTGTAT > 1:3177431/1‑91 TCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTAT > 2:2588469/1‑91 CAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATA > 2:1046414/1‑91 CAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATA < 1:2315688/91‑1 AAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTGTCTTCGTTATTCGATCCTGTATAT > 2:589801/1‑91 AAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATAT < 2:1135843/91‑1 AAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATAT > 1:299743/1‑91 AAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATAT < 1:2734217/91‑1 AGAGAAATAAATTTCTTTAAATTTTGGATATGCTTTTCAATATTTTGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1733060‑1732959‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATAT > USA300TCH1516_ALE/1733016‑1733105 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |