BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1732959 =	126 (0.660)	11 (0.070)	7/136	NT	8.2%	intergenic (+145/+92)	limB_2/USA300HOU_RS08645	Limonene 1,2‑monooxygenase/hypothetical protein
*	?	USA300TCH1516_ALE	1733016 =	139 (0.860)	11 (0.070)	7/136	NT	8.2%	intergenic (+202/+35)	limB_2/USA300HOU_RS08645	Limonene 1,2‑monooxygenase/hypothetical protein

Only 100 of 250 total aligned reads displayed.

GATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATAT  >  USA300TCH1516_ALE/1732926‑1733105

gATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCaa                                                                                           <  2:2857898/91‑1 (MQ=255)

  ttCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCaaaa                                                                                         >  1:2054226/1‑91 (MQ=255)

   tCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAat                                                                                        >  1:1011604/1‑91 (MQ=255)

    cAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAata                                                                                       <  2:861581/91‑1 (MQ=255)

      aaTTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATAtt                                                                                     >  1:1131390/1‑91 (MQ=255)

       aTTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTg                                                                                    >  2:74888/1‑91 (MQ=255)

       aTTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTg                                                                                    >  1:596739/1‑91 (MQ=255)

          cACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGaaa                                                                                 >  1:3560909/1‑91 (MQ=255)

              tAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCa                                                                             >  2:194024/1‑91 (MQ=255)

              tAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCa                                                                             >  2:1514417/1‑91 (MQ=255)

               aaaaTTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCat                                                                            <  1:953524/91‑1 (MQ=255)

                 aaTTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCatat                                                                          <  1:1387893/91‑1 (MQ=255)

                   ttCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATcc                                                                        <  1:81073/91‑1 (MQ=255)

                    tCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCa                                                                       <  1:2578645/91‑1 (MQ=255)

                      tAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCaaa                                                                     >  1:1489591/1‑91 (MQ=255)

                      tAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCaaa                                                                     >  1:1374925/1‑91 (MQ=255)

                      tAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCaaa                                                                     >  1:3026690/1‑91 (MQ=255)

                            aaaTATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTaa                                                               >  1:1700510/1‑91 (MQ=255)

                            aaaTATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTaa                                                               <  2:2176735/91‑1 (MQ=255)

                             catatGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTaaa                                                              <  2:3852642/90‑1 (MQ=255)

                             aaaatGAATGCGCCCCTTCAACTTTACACTGTGTAAGGGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATATaaa                                                              <  1:793131/88‑1 (MQ=255)

                              atatGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAg                                                             >  2:294650/1‑91 (MQ=255)

                                 TGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGaaa                                                          <  1:436017‑M1/91‑1 (MQ=255)

                                 TGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGaaa                                                          <  1:3852064‑M1/91‑1 (MQ=255)

                                  GAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAat                                                         >  2:2639012‑M1/1‑91 (MQ=255)

                                   aaagcgccccatcaaataaacacttacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAatt                                                        >  1:2838673‑M2/56‑91 (MQ=255)

                                   AAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatt                                                        <  2:1683004‑M1/91‑1 (MQ=255)

                                    AAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAattt                                                       >  1:2244697‑M1/1‑91 (MQ=255)

                                    AAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAattt                                                       <  2:2095874‑M1/91‑1 (MQ=255)

                                     AGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAattta                                                      >  1:1453714‑M1/1‑91 (MQ=255)

                                     AGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAattta                                                      >  2:145102‑M1/1‑91 (MQ=255)

                                     AGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAattta                                                      <  2:2044521‑M1/91‑1 (MQ=255)

                                       CGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatttatt                                                    <  1:2697640‑M1/91‑1 (MQ=255)

                                         CCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtc                                                  >  1:2934822‑M1/1‑91 (MQ=255)

                                           ccatcaaataaacacttacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtctc                                                >  1:1094435‑M2/48‑91 (MQ=255)

                                           CCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtctc                                                >  2:1149142‑M1/1‑91 (MQ=255)

                                            catcaaataaacacttacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTctct                                               >  1:3771995‑M2/47‑91 (MQ=255)

                                            catcaaataaacacttacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTctct                                               >  1:1026283‑M2/47‑91 (MQ=255)

                                            catcaaataaacacttacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTctct                                               >  1:3371383‑M2/47‑91 (MQ=255)

                                            CTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTctct                                               >  1:2646212‑M1/1‑91 (MQ=255)

                                              tCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCttt                                             <  2:1053953/91‑1 (MQ=255)

                                              tCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCttt                                             <  1:744474/91‑1 (MQ=255)

                                               cAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTa                                            <  2:3153970/91‑1 (MQ=255)

                                                 aCTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATc                                          <  2:3439986/91‑1 (MQ=255)

                                                 aCTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATc                                          >  2:1648095/1‑91 (MQ=255)

                                                  ataaacacttacacagtgtaaagttgaaggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCt                                         >  2:845685‑M2/41‑91 (MQ=255)

                                                   tttACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCtt                                        >  2:2122565/1‑91 (MQ=255)

                                                    ttACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTc                                       >  1:2748981/1‑91 (MQ=255)

                                                     tACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCa                                      <  2:1700510/91‑1 (MQ=255)

                                                      acacTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCAt                                     >  1:334231/1‑91 (MQ=255)

                                                      acacTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCAt                                     >  2:2289485/1‑91 (MQ=255)

                                                       cacTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCAtt                                    <  2:367038/91‑1 (MQ=255)

                                                       cacTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCAtt                                    <  2:2460378/91‑1 (MQ=255)

                                                       cacTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCAtt                                    >  1:1760617/1‑91 (MQ=255)

                                                       cacTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCAtt                                    <  2:3290124/91‑1 (MQ=255)

                                                          tgtgTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTc                                 >  1:683592/1‑91 (MQ=255)

                                                          tgtgTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCAGATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTc                                 <  2:2999295/91‑1 (MQ=255)

                                                           gtgtAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTGAAGAAATTTATTTCTCTTTATCTTCATTTTCt                                <  2:3812579/91‑1 (MQ=255)

                                                            tgtAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCtt                               <  1:3120195/91‑1 (MQ=255)

                                                              tAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCtttt                             <  1:2432210/91‑1 (MQ=255)

                                                               aaGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCttttt                            >  2:259391/1‑91 (MQ=255)

                                                               aaGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCttttt                            <  2:3324853/91‑1 (MQ=255)

                                                                aGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCtttttt                           >  1:3792121/1‑91 (MQ=255)

                                                                 gtgtTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTtc                          <  1:1279687/91‑1 (MQ=255)

                                                                 gcgtTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTtc                          <  1:1175868/89‑1 (MQ=255)

                                                                   gtctATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTtctc                        <  2:2658357/88‑1 (MQ=255)

                                                                   gtTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGGATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTtctc                        <  2:3835619/91‑1 (MQ=255)

                                                                   gtTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTtctc                        <  2:2659883/91‑1 (MQ=255)

                                                                     ttATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCtt                      <  2:635256/91‑1 (MQ=255)

                                                                      tATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTACCTTCATTTTCTTTTTTCTCTTc                     >  2:3125158/1‑91 (MQ=255)

                                                                        tttGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGt                   <  1:2200894/91‑1 (MQ=255)

                                                                        tttGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGt                   <  2:3567946/91‑1 (MQ=255)

                                                                        tttGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGt                   <  2:1384571/91‑1 (MQ=255)

                                                                         ttGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGtt                  <  1:1318032/91‑1 (MQ=255)

                                                                          tGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGGAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTa                 <  1:2492503/91‑1 (MQ=255)

                                                                          tGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTa                 >  2:2494794/1‑91 (MQ=255)

                                                                          tGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTa                 <  1:3065721/91‑1 (MQ=255)

                                                                            aTGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTAtt               <  1:1594618/91‑1 (MQ=255)

                                                                             tGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTc              >  2:2348522/1‑91 (MQ=255)

                                                                              ggggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCg             <  2:3170513‑M2/79‑1 (MQ=255)

                                                                               gggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTcgt            >  2:2748302‑M2/12‑90 (MQ=255)

                                                                               gggcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGa            <  2:1577987‑M2/80‑1 (MQ=255)

                                                                                ggCGCTTTCAAAATATTGAAACGTATATCCCAAATTTAAAGAAATTTACTTCGCTTTATCGTCATATTCTTTTTATTCTTCGTTATTCggt           >  1:1801109/1‑89 (MQ=255)

                                                                                 gcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATc          >  2:756339‑M2/10‑91 (MQ=255)

                                                                                 gcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATc          <  2:2222341‑M2/82‑1 (MQ=255)

                                                                                 gcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATc          >  1:1487434‑M2/10‑91 (MQ=255)

                                                                                 gcgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATc          >  1:361718‑M2/10‑91 (MQ=255)

                                                                                  cgctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATcc         <  1:1878683‑M2/83‑1 (MQ=255)

                                                                                    ctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTg       >  1:2467709‑M2/7‑91 (MQ=255)

                                                                                    ctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTg       <  2:1016487‑M2/85‑1 (MQ=255)

                                                                                    ctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTg       >  2:464724‑M2/7‑91 (MQ=255)

                                                                                    ctttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTg       <  1:3859158‑M2/85‑1 (MQ=255)

                                                                                     tttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGt      >  2:1089767‑M2/6‑91 (MQ=255)

                                                                                     tttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGt      >  1:1618438‑M2/6‑91 (MQ=255)

                                                                                      ttcaAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGta     <  2:186892‑M2/87‑1 (MQ=255)

                                                                                       tcaAAATATTGAAAAGTATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCAATTTCTTTTTTCTCTTCGTTATTCGATCCTGtat    >  1:3177431‑M2/4‑91 (MQ=255)

                                                                                        caAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGtata   <  1:2315688‑M2/89‑1 (MQ=255)

                                                                                         aAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTGTCTTCGTTATTCGATCCTGTatat  >  2:589801‑M2/2‑91 (MQ=255)

                                                                                         aAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTatat  <  2:1135843‑M2/90‑1 (MQ=255)

                                                                                         aAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTatat  <  1:2734217‑M2/90‑1 (MQ=255)

GATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTCGATCCTGTATAT  >  USA300TCH1516_ALE/1732926‑1733105

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.