| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1732970 | 117 (0.610) | 19 (0.120) | 11/136 | NT | 13.8% | intergenic (+156/+81) | limB_2/USA300HOU_RS08645 | Limonene 1,2‑monooxygenase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1733003 | 139 (0.860) | intergenic (+189/+48) | limB_2/USA300HOU_RS08645 | Limonene 1,2‑monooxygenase/hypothetical protein | |||||
AGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1732869‑1732970‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaagcgccccATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATA < USA300TCH1516_ALE/1733003‑1732914 AGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATAT < 2:64181/91‑1AGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATAT > 2:3731660/1‑91 GTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATG < 1:3433401/91‑1 GTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATG < 2:3262710/91‑1 GTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATG < 2:3262909/91‑1 GTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATG < 1:3433400/91‑1 GTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATG < 2:3670767/91‑1 TAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGA < 1:1379526/91‑1 TAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGA < 2:1513332/91‑1 TAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGA > 1:1845495/1‑91 ACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAA < 2:3470362/91‑1 CAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAG > 1:2658484/1‑91 CAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAG < 2:3180581/91‑1 AGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAACTTCTAATGCAAATATGAAAGC > 1:264420/1‑91 AGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGC > 1:265707/1‑91 GCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCG < 1:334823/91‑1 GCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCG < 1:335109/91‑1 GCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCG < 1:1290102/91‑1 GCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCG < 2:3787273/91‑1 GCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCG < 2:3787119/91‑1 GCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCG < 1:1637683/91‑1 GCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCG < 1:1130733/91‑1 CATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGC < 2:594531/91‑1 CATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGC < 1:3769701/91‑1 CATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGC < 2:594550/91‑1 CATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGC < 2:746067/91‑1 CATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGC < 2:594800/91‑1 ATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCC > 2:2934822/1‑91 ATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCC > 2:608202/1‑91 TTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCC > 2:3215387/1‑91 TTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTATTGCAAATATGAAAGCGCCCC < 2:1507169/91‑1 TTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCC > 2:2574110/1‑91 TTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCC > 2:1612413/1‑91 TTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCC < 2:1507099/91‑1 TTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCC < 1:1598558/91‑1 AATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCACCCCATCAAATAAACACTTACACAGTGTAAA < 1:2688124/91‑1 AATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCACCCCATCAAATAAACACTTACACAGTGTAAA < 1:2688051/91‑1 TCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGT < 2:3652709/91‑1 TCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCG > 2:911921/1‑58 TCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCG < 1:911921/58‑1 ATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTG < 1:208376/91‑1 ATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTG < 2:1587889/91‑1 ATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTG < 1:2860185/91‑1 ATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTG < 1:890370/91‑1 TTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAA < 1:1518849/91‑1 TTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAA < 1:2034665/91‑1 TATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAG < 2:757134/91‑1 TATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAG < 2:763402/91‑1 ATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGG < 1:3544422/91‑1 TTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGG < 2:2974204/91‑1 TAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCG < 2:1282513/91‑1 TAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCG < 2:1716863/91‑1 TAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCG < 2:1282920/91‑1 AATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTT < 1:3847552/91‑1 ANGATTCAANTTCACTNAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTC < 1:2398499/91‑1 GATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCAT < 1:661796/91‑1 TGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCA > 1:2799211/1‑91 TGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCA < 1:3036563/91‑1 GAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCAT > 2:918564/1‑91 GAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCAT < 2:446801/91‑1 GAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCAT < 1:2391940/91‑1 AAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATT > 1:1455286/1‑91 AAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTA > 2:625676/1‑91 AAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTA > 2:2689117/1‑91 AAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTA < 2:3317440/91‑1 AGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTAC < 2:1464038/91‑1 AGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTAC > 1:440456/1‑91 AGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTAC < 1:1577987/91‑1 AGCGACCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTAC > 1:3057735/1‑91 GCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACT < 2:770412/91‑1 GCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACT < 1:418102/91‑1 GCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACT > 2:2192908/1‑91 GCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACT < 2:3671198/91‑1 GCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACT > 2:43258/1‑91 GCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACT > 1:739303/1‑91 GCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAA > 2:3301713/1‑91 GCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAA > 2:1352052/1‑91 GCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAA > 2:1352331/1‑91 CCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAA < 2:2018022/91‑1 CCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAA > 1:998645/1‑91 CCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAA > 1:998748/1‑91 CCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAA < 1:1527620/91‑1 CCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAA < 2:748866/91‑1 CCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAA < 1:3012930/91‑1 CCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAA < 2:3836153/91‑1 CCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAA < 1:3013047/91‑1 CCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAA > 1:3765377/1‑91 CCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAA < 2:541337/91‑1 CCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAA < 2:150478/91‑1 CCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAAT > 1:2427216/1‑91 CCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAAT < 2:1878683/91‑1 CCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAAT > 2:3147112/1‑91 CATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATA > 2:3749907/1‑91 AGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1732869‑1732970‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaagcgccccATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATA < USA300TCH1516_ALE/1733003‑1732914 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |