| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1732970 | 117 (0.610) | 19 (0.120) | 11/136 | NT | 13.8% | intergenic (+156/+81) | limB_2/USA300HOU_RS08645 | Limonene 1,2‑monooxygenase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1733003 | 139 (0.860) | intergenic (+189/+48) | limB_2/USA300HOU_RS08645 | Limonene 1,2‑monooxygenase/hypothetical protein | |||||
Only 100 of 264 total aligned reads displayed.
TTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTC > USA300TCH1516_ALE/1732913‑1733093 | ttatttTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGAt > 2:2672470/1‑91 (MQ=255) aTTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATgg < 2:1878683‑M2/91‑3 (MQ=255) aTTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATgg > 2:3147112‑M2/1‑89 (MQ=255) ttttAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATggg < 2:3836153‑M2/91‑4 (MQ=255) ttttAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATggg < 2:541337‑M2/91‑4 (MQ=255) ttttAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATggg > 1:3765377‑M2/1‑88 (MQ=255) ttttAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATggg < 1:3012930‑M2/91‑4 (MQ=255) tttAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATgggg > 1:998645‑M2/1‑87 (MQ=255) ttAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATggggc > 2:1352331‑M2/1‑86 (MQ=255) aGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATggggcgc < 1:418102‑M2/91‑8 (MQ=255) aGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATggggcgc > 2:43258‑M2/1‑84 (MQ=255) aGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATggggcgc > 1:739303‑M2/1‑84 (MQ=255) aGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATggggcgc < 2:770412‑M2/91‑8 (MQ=255) gTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATgggtcgct > 1:3057735‑M2/1‑83 (MQ=255) gTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATggggcgct < 2:1464038‑M2/91‑9 (MQ=255) tAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATggggcgctt > 2:625676‑M2/1‑82 (MQ=255) tAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATggggcgctt < 2:3317440‑M2/91‑10 (MQ=255) gATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCaa < 2:2857898/91‑1 (MQ=255) tCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAat > 1:1011604/1‑91 (MQ=255) cAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAata < 1:1526825/91‑1 (MQ=255) aaaTTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAatat < 2:717302/91‑1 (MQ=255) aTTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTg > 1:1384571/1‑91 (MQ=255) aTTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTg > 2:74888/1‑91 (MQ=255) aTTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTg < 1:3456287/91‑1 (MQ=255) aCTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGaaaa > 2:2315688/1‑91 (MQ=255) ttAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGc > 1:3849742/1‑91 (MQ=255) tAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCa > 2:1514417/1‑91 (MQ=255) tAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCa > 2:194024/1‑91 (MQ=255) aaaaTTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCat > 1:2821321/1‑91 (MQ=255) aaTTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCatat > 1:1579316/1‑91 (MQ=255) ttCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATcc < 1:81073/91‑1 (MQ=255) tCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCa < 1:2578645/91‑1 (MQ=255) cTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCaa > 1:1030527/1‑91 (MQ=255) tAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCaaa > 1:3026690/1‑91 (MQ=255) tAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCaaa > 1:1135843/1‑91 (MQ=255) tAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCaaa > 1:1489157/1‑91 (MQ=255) tAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCaaa > 2:239384/1‑91 (MQ=255) aTGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAAt > 1:2217991/1‑91 (MQ=255) cAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTa > 2:86632/1‑91 (MQ=255) aaaTATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTaa < 2:2176735/91‑1 (MQ=255) aaaTATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTaa > 1:1700510/1‑91 (MQ=255) catatGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTaaa < 2:3852642/90‑1 (MQ=255) aaaatGAATGCGCCCCTTCAACTTTACACTGTGTAAGGGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATATaaa < 1:793131/88‑1 (MQ=255) atatGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAg > 1:3557472/1‑91 (MQ=255) atatGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAg > 2:294650/1‑91 (MQ=255) atGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATggggcgctttcatatttgcattagaattttaagtgaatttgaatc < 1:661796‑M2/91‑46 (MQ=255) atGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGaa > 2:3484347/1‑91 (MQ=255) TGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGaaa < 1:2395390‑M1/91‑1 (MQ=255) TGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGaaa < 1:3852482‑M1/91‑1 (MQ=255) GAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAat > 2:2639012‑M1/1‑91 (MQ=255) GAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAat > 1:309446‑M1/1‑91 (MQ=255) AAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatt < 2:2561541‑M1/91‑1 (MQ=255) AAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatt > 1:541337‑M1/1‑91 (MQ=255) AAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAatt < 1:1128326‑M1/91‑1 (MQ=255) AAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAattt < 2:2095874‑M1/91‑1 (MQ=255) AGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAattta > 1:1453714‑M1/1‑91 (MQ=255) AGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAattta < 2:2044521‑M1/91‑1 (MQ=255) AGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAattta > 1:1612413‑M1/1‑91 (MQ=255) cgcCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATggggcgctttcatatttgcattagaattttaagtgaatttgaatcattacta < 2:1282920‑M2/91‑53 (MQ=255) CCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtct < 1:2758043‑M1/91‑1 (MQ=255) CCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTtctc > 2:1149591‑M1/1‑91 (MQ=255) cTTCAACTTTACACTGTGTAAGTGTTTATTTGATggggcgctttcatatttgcattagaattttaagtgaatttgaatcattactaaaata < 2:763402‑M2/91‑58 (MQ=255) CTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTctct > 1:2646212‑M1/1‑91 (MQ=255) ttCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCtt < 1:317463/91‑1 (MQ=255) tCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCttt < 2:1053953/91‑1 (MQ=255) cAACTTTACACTGTGTAAGTGTTTATTTGATggggcgctttcatatttgcattagaattttaagtgaatttgaatcattactaaaataaat < 1:208376‑M2/91‑61 (MQ=255) cAACTTTACACTGTGTAAGTGTTTATTTGATggggcgctttcatatttgcattagaattttaagtgaatttgaatcattactaaaataaat < 1:2860185‑M2/91‑61 (MQ=255) cAACTTTACACTGTGTAAGTGTTTATTTGATggggcgctttcatatttgcattagaattttaagtgaatttgaatcattactaaaataaat < 1:890370‑M2/91‑61 (MQ=255) aaCTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTAt > 1:2049606/1‑91 (MQ=255) aCTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATc > 2:1648095/1‑91 (MQ=255) tttACACTGTGTAAGTGTTTATTTGATggggtgctttcatatttgcattagaattttaagtgaatttgaatcattactaaaataaatgatt < 1:2688124‑M2/91‑65 (MQ=255) tttACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCtt > 2:3231739/1‑91 (MQ=255) tttACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCtt > 2:2122565/1‑91 (MQ=255) ttACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTc < 2:2658484/91‑1 (MQ=255) tACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCa < 2:2482522/91‑1 (MQ=255) tACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCa < 2:1700510/91‑1 (MQ=255) tACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCa > 1:1323344/1‑91 (MQ=255) acacTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCAt > 1:334231/1‑91 (MQ=255) cacTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCAtt < 2:367038/91‑1 (MQ=255) cacTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCAtt > 1:1760617/1‑91 (MQ=255) cacTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCAtt < 2:1141602/91‑1 (MQ=255) acTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCAttt > 2:1446685/1‑91 (MQ=255) cTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCAtttt < 2:1579456/91‑1 (MQ=255) tgtgTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCAGATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTc < 2:2999295/91‑1 (MQ=255) gtgtAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTGAAGAAATTTATTTCTCTTTATCTTCATTTTCt < 2:3812579/91‑1 (MQ=255) tgtAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCtt < 2:3728831/91‑1 (MQ=255) gtAAGTGATTATTTGATGGGGCGCTTTCAAAATATTTAAAAGCATATCCAAAATTTAAAGAAATTTACTTCTCTTTCTCTTCATTTTCttt > 2:3606182/1‑91 (MQ=255) tAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCtttt < 1:2432210/91‑1 (MQ=255) aaGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCttttt < 2:3324393/91‑1 (MQ=255) aGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCtttttt > 1:3792121/1‑91 (MQ=255) gtTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTtctc < 2:2279289/91‑1 (MQ=255) tttATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTctct < 1:3665122/91‑1 (MQ=255) ttATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCtt > 1:2305641/1‑91 (MQ=255) tATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTACCTTCATTTTCTTTTTTCTCTTc > 2:3125158/1‑91 (MQ=255) aTTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCg > 1:1311681/1‑91 (MQ=255) ttGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGtt > 1:1198522/1‑91 (MQ=255) tGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGGAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTa < 1:2492503/91‑1 (MQ=255) tGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTa > 1:1812204/1‑91 (MQ=255) gATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTAt > 2:169793/1‑91 (MQ=255) tGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTc > 1:2714135/1‑91 (MQ=255) | TTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCTTCAACTTTACACTGTGTAAGTGTTTATTTGATGGGGCGCTTTCAAAATATTGAAAAGCATATCCAAAATTTAAAGAAATTTATTTCTCTTTATCTTCATTTTCTTTTTTCTCTTCGTTATTC > USA300TCH1516_ALE/1732913‑1733093 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |