| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1775193 | 151 (0.790) | 13 (0.080) | 8/142 | NT | 9.0% | intergenic (‑86/+68) | engB/clpX | putative GTP‑binding protein EngB/ATP‑dependent Clp protease ATP‑binding subunit ClpX |
| ? | USA300TCH1516_ALE | = 1775229 | 129 (0.760) | intergenic (‑122/+32) | engB/clpX | putative GTP‑binding protein EngB/ATP‑dependent Clp protease ATP‑binding subunit ClpX | |||||
ATTAACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1775096‑1775193‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagctccAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGAA < USA300TCH1516_ALE/1775229‑1775141 ATTAACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAA < 2:3010865/91‑1ATTAACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAA < 2:3010814/91‑1ATTAACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATATGAACCTTTCGGTATACATTATAAAA < 2:2221490/91‑1 TTAACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAA > 2:550314/1‑91 TTAACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAA < 2:2906545/91‑1 AACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAG < 2:2289737/91‑1 AACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAG < 2:2687728/91‑1 AACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAG > 1:2053805/1‑91 AACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAG > 1:3036901/1‑91 ACTTTCATTTTATATCCTCACTTTTTTTTATTTTTTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGC > 2:68131/1‑91 ACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGC > 2:2718570/1‑91 ACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGC > 1:428250/1‑91 CTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCT < 1:2188589/91‑1 CTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCT < 1:2537716/91‑1 CTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCT < 1:447205/91‑1 CTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCT < 1:2188509/91‑1 CTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCT < 1:742270/91‑1 CTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCT < 2:1800202/91‑1 TTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTC > 1:1013397/1‑91 TTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCC > 1:674952/1‑91 TTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCT > 1:1606493/1‑83 TTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCT < 2:1606493/83‑1 TCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAA < 2:1324791/91‑1 TCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACT < 2:3262059/91‑1 CTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTT < 1:390608/91‑1 CTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTT < 1:654377/91‑1 TCAATTCTA‑CATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGAT < 1:2405078/91‑1 CAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGAT < 1:2405126/91‑1 AATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATC < 2:975402/91‑1 AATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATC < 1:2066245/91‑1 TCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGA < 2:476056/91‑1 TACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGC < 1:1073375/91‑1 TACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGC < 2:2694145/91‑1 ACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCT < 2:1321718/91‑1 ACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCT < 2:3233133/91‑1 aagAGCTGCGATCAAATTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAAGGTATACCGAAAGGTTCAAATATTATATAAT < 2:51921/88‑1 AAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAAT < 1:3626406/91‑1 AAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAAT > 1:3033232/1‑91 AAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAAT > 1:2360633/1‑91 AAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATG > 2:814758/1‑91 AAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATG > 2:2909247/1‑91 AAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGG < 2:734969/91‑1 AAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGG < 2:2360633/91‑1 AGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGT < 1:2909247/91‑1 AGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGT < 2:1343998/91‑1 GCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTA > 2:2706356/1‑91 GCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTA > 1:19291/1‑91 GCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTA < 2:1380519/91‑1 CTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAG > 1:2048388/1‑91 TCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGA < 1:3399528/91‑1 TCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGA < 2:2012549/91‑1 TCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGA < 1:1618564/91‑1 TCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGA < 2:2012053/91‑1 TCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGA > 2:1276723/1‑91 CCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGAA < 2:2853625/91‑1 CCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGAA > 2:3102183/1‑91 CCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGAA < 2:1149732/91‑1 ATTAACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAAAGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1775096‑1775193‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagctccAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGAA < USA300TCH1516_ALE/1775229‑1775141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |