| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1810695 = | 202 (1.060) | 10 (0.060) | 6/150 | NT | 5.0% | coding (900/1230 nt) | USA300HOU_RS09025 | NAD‑dependent malic enzyme |
| ? | USA300TCH1516_ALE | 1810720 = | 187 (1.050) | coding (875/1230 nt) | USA300HOU_RS09025 | NAD‑dependent malic enzyme | |||||
AGATATGGTTAAGAGTATGGCAGATAATCCAATTATATTTGCAATGGCTAATCCAAATCCTGAAATAATACCTGATGATGCCAAAGCGGCAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1810788‑1810695‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggtATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCTACA > USA300TCH1516_ALE/1810720‑1810809 AGATATGGTTAAGAGTATGGCAGATAATCCAATTATATTTGCAATGGCTAATCCAAATCCTGAAATAATACCTGATGATGCCAAAGCGGCA > 2:1008726/1‑91AGATATGGTTAAGAGTATGGCAGATAATCCAATTATATTTGCAATGGCTAATCCAAATCCTGAAATAATACCTGATGATGCCAAAGCGGCA > 2:39080/1‑91AGATATGGTTAAGAGTATGGCAGATAATCCAATTATATTTGCAATGGCTAATCCAAATCCTGAAATAATACCTGATGATGCCAAAGCGGCA > 2:2121613/1‑91 GATATGGTTAAGAGTATGGCAGATAATCCAATTATATTTGCAATGGCTAATCCAAATCCTGAAATAATACCTGATGATGCCAAAGCGGCAG < 2:1335922/91‑1 TGAAATAATACCTGATGATGCCAAAGCGGCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTC > 2:2422367/1‑91 TAATACCTGATGATGCCAAAGCGGCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAAC > 2:14660/1‑91 ATACCTGATGATGCCAAAGCGGCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCA > 1:748211/1‑91 TACCTGATGATGCCAAAGCGGCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCAT > 1:935929/1‑91 TACCTGATGATGCCAAAGCGGCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCAT > 2:1706898/1‑91 ACCTGATGATGCCAAAGCGGCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATA > 1:1244892/1‑91 ACCTGATGATGCCAAAGCGGCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATA > 1:963155/1‑91 ACCTGATGATGCCAAAGCGGCAGGTATTATTTCAGGACTTGGATTAGCCATTGCACATATAATTGGATTATCTGCCATACTCTTAACCATA > 2:684321/1‑91 CCTGATGATGCCAAAGCGGCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATAT > 1:2274311/1‑91 CCTGATGATGCCAAAGCGGCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATAT > 2:1058741/1‑91 AGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCT > 1:672640/1‑91 AGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCT > 2:682343/1‑91 GTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCTAC < 1:1317022/91‑1 GTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCTAC < 1:477421/91‑1 GTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCTAC < 1:1317055/91‑1 GTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACACTTAACCATATCTTGTGACAGCGCATTAGCTAC > 1:3442466/1‑91 GTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCA < 1:807447/54‑1 GTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCA < 1:805452/54‑1 GTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCA > 2:805452/1‑54 GTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCA > 2:807447/1‑54 TATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCTACA < 2:1982613/91‑1 TATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCTACA < 2:1982943/91‑1 TATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCTACA > 1:2325928/1‑91 TATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCTACA > 2:2508329/1‑91 TATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCTACA < 1:1911334/91‑1 TATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCTACA > 1:1828271/1‑91 AGATATGGTTAAGAGTATGGCAGATAATCCAATTATATTTGCAATGGCTAATCCAAATCCTGAAATAATACCTGATGATGCCAAAGCGGCAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1810788‑1810695‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggtATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCTACA > USA300TCH1516_ALE/1810720‑1810809 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |