BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1810695 =	202 (1.060)	10 (0.060)	6/150	NT	5.0%	coding (900/1230 nt)	USA300HOU_RS09025	NAD‑dependent malic enzyme
*	?	USA300TCH1516_ALE	1810720 =	187 (1.050)	10 (0.060)	6/150	NT	5.0%	coding (875/1230 nt)	USA300HOU_RS09025	NAD‑dependent malic enzyme

Only 100 of 244 total aligned reads displayed.

GGGAAAGCTAATACATTATTAATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCTACAG  >  USA300TCH1516_ALE/1810630‑1810810

gggAAAGCTAATACATTATTAATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGta                                                                                            <  1:1038770/91‑1 (MQ=255)

gggAAAGCTAATACATTATTAATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGta                                                                                            >  1:3470466/1‑91 (MQ=255)

gggAAAGCTAATACATTATTAATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGta                                                                                            >  2:3539769/1‑91 (MQ=255)

gggAAAGCTAATACATTATTAATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGta                                                                                            >  2:1346778/1‑91 (MQ=255)

gggAAAGCTAATACATTATTAATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGta                                                                                            <  2:2679176/91‑1 (MQ=255)

gggAAAGCTAATACATTATTAATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGta                                                                                            >  2:3203104/1‑91 (MQ=255)

aagAAAGCTAATACATTATTAATTTGGTTATGATAGTCTGAACGTCCTGTAACAACAACTCGTGCACCTGCCGATTTGGCATCATCAGGta                                                                                            <  2:49770/89‑1 (MQ=255)

 tggttaagagtatggcagataatccaattatatttgcaatggctaatccaaatcctgaaataatACCTGCCGCTTTGGCATCATCAGGtat                                                                                           >  1:748211‑M1/65‑91 (MQ=255)

   gttaagagtatggcagataatccaattatatttgcaatggctaatccaaatcctgaaataatACCTGCCGCTTTGGCATCATCAGGtatta                                                                                         >  2:14660‑M1/63‑91 (MQ=255)

   aaaGCTAATACATTATTAATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGtatta                                                                                         >  1:2039592/1‑91 (MQ=255)

     aGCTAATACATTATTAATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTattatt                                                                                       <  1:318206/91‑1 (MQ=255)

     aGCTAATACATTATTAATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTattatt                                                                                       >  1:2545464/1‑91 (MQ=255)

      gCTAATACATTATTAATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTAttt                                                                                      <  2:3794492/91‑1 (MQ=255)

       cTAATACATTATTAATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTc                                                                                     >  1:1606282/1‑91 (MQ=255)

        tAATACATTATTAATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCa                                                                                    <  2:329653/91‑1 (MQ=255)

          aTACATTATTAATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCCGCCGCTTTGGCATCATCAGGTATTATTTCAgg                                                                                  <  1:2925223/91‑1 (MQ=255)

           tACATTATTAATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGa                                                                                 <  2:1546083/91‑1 (MQ=255)

            aCATTATTAATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGAt                                                                                >  1:1008726/1‑91 (MQ=255)

            aCATTATTAATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGAt                                                                                >  2:3414292/1‑91 (MQ=255)

            aCATTATTAATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATCTCAGGAt                                                                                >  1:1941721/1‑91 (MQ=255)

               ttattaATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTg                                                                             >  1:3785615/1‑91 (MQ=255)

                tattaATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTgg                                                                            <  2:3101/91‑1 (MQ=255)

                tattaATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTgg                                                                            <  1:2148267/91‑1 (MQ=255)

                 attaATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGa                                                                           >  1:1962103/1‑91 (MQ=255)

                  ttaATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGAt                                                                          >  2:2285076/1‑91 (MQ=255)

                  ttaATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGAt                                                                          <  1:2428837/91‑1 (MQ=255)

                   taATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGAtt                                                                         >  2:2875574/1‑91 (MQ=255)

                   taATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGAtt                                                                         >  2:910775/1‑91 (MQ=255)

                     aTTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAg                                                                       >  1:3846599/1‑91 (MQ=255)

                      tttGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGTATCATCAGGTATTATTTCAGGATTTGGATTAGc                                                                      <  2:2597733/91‑1 (MQ=255)

                       ttGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGcc                                                                     >  2:325110/1‑91 (MQ=255)

                        tGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCa                                                                    <  1:3380018/91‑1 (MQ=255)

                         ggTTAGGCTAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCAt                                                                   <  2:960922/91‑1 (MQ=255)

                         ggTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCAt                                                                   >  2:522243/1‑91 (MQ=255)

                         ggTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCAt                                                                   <  1:1626099/91‑1 (MQ=255)

                             aGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCa                                                               <  1:1728006/91‑1 (MQ=255)

                              ggATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCCTCAGGTATTATTTCAGGATTTGGATTAGCCATTGCaa                                                              >  2:625772/1‑91 (MQ=255)

                              ggATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCaa                                                              >  1:108395/1‑91 (MQ=255)

                              ggATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCaa                                                              <  2:1323917/91‑1 (MQ=255)

                              ggATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCaa                                                              <  1:440215/91‑1 (MQ=255)

                               gATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCaaa                                                             <  2:1757769/91‑1 (MQ=255)

                               gATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTACaaa                                                             >  1:3239059/1‑91 (MQ=255)

                                 tAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAata                                                           <  2:3040832/91‑1 (MQ=255)

                                   gTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAAtata                                                         >  1:660916/1‑91 (MQ=255)

                                   gTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCACTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAAtata                                                         >  1:3090837/1‑91 (MQ=255)

                                     cTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAAt                                                       >  2:3716125/1‑91 (MQ=255)

                                        aaCGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTgg                                                    >  1:1571791/1‑91 (MQ=255)

                                         aCGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGa                                                   <  1:2086651/91‑1 (MQ=255)

                                            tCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTa                                                >  2:3624857/1‑91 (MQ=255)

                                             ccTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTAGTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTAt                                               >  2:180672/1‑91 (MQ=255)

                                               tGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCt                                             >  2:936533/1‑91 (MQ=255)

                                                gTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTg                                            >  2:854498/1‑91 (MQ=255)

                                                gTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTg                                            <  2:2465239/91‑1 (MQ=255)

                                                gTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTg                                            >  2:1195452/1‑91 (MQ=255)

                                                gTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTg                                            >  1:3853767/1‑91 (MQ=255)

                                                 tACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGc                                           >  1:290922/1‑91 (MQ=255)

                                                  aCCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGcc                                          >  1:131039/1‑91 (MQ=255)

                                                  aCCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGcc                                          >  1:1622237/1‑91 (MQ=255)

                                                   ccAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCa                                         <  1:1317103/91‑1 (MQ=255)

                                                    caacaaCTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCAt                                        <  1:1730833/91‑1 (MQ=255)

                                                       caacTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATAct                                     <  2:1590147/91‑1 (MQ=255)

                                                          cTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCtt                                  >  1:2650746/1‑91 (MQ=255)

                                                            cGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTaa                                >  2:1687244/1‑91 (MQ=255)

                                                            cGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTaa                                >  1:2577121/1‑91 (MQ=255)

                                                             gTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAAc                               >  1:541922/1‑91 (MQ=255)

                                                              tGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAGcc                              <  2:3470466/91‑1 (MQ=255)

                                                              tGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAAcc                              >  2:3644800/1‑91 (MQ=255)

                                                              tGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAAcc                              <  2:71111/91‑1 (MQ=255)

                                                               gCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCa                             <  1:1868637/91‑1 (MQ=255)

                                                                tacctgatgatgccaaagcggcaggtATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCat                            >  2:1706898‑M2/27‑91 (MQ=255)

                                                                 acctgatgatgccaaagcggcaggtATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCata                           >  1:963155‑M2/26‑91 (MQ=255)

                                                                 acctgatgatgccaaagcggcaggtATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCata                           >  1:1244892‑M2/26‑91 (MQ=255)

                                                                  cctgatgatgccaaagcggcaggtATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCatat                          >  1:2274311‑M2/25‑91 (MQ=255)

                                                                    TGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCt                        >  2:39080‑M1/1‑91 (MQ=255)

                                                                    TGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCt                        >  2:2121613‑M1/1‑91 (MQ=255)

                                                                      ccGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCGTATCTtg                      >  1:1930631/1‑91 (MQ=255)

                                                                        gCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTtgtg                    <  1:3400585/91‑1 (MQ=255)

                                                                         cTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGa                   <  2:131039/91‑1 (MQ=255)

                                                                         cTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGa                   <  2:1269644/91‑1 (MQ=255)

                                                                         cTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGa                   >  2:106382/1‑91 (MQ=255)

                                                                         cTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGa                   <  1:638066/91‑1 (MQ=255)

                                                                            tGGCATCATCAGGTATTATTTCAGGATTTGGGTTAGCCATTGCAAATATAATTGGATCATCTGCCATACTCTTAACCATATCTTGTGACAg                >  1:3450294/1‑91 (MQ=255)

                                                                            tGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAg                >  2:2435418/1‑91 (MQ=255)

                                                                            tGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAg                >  2:105756/1‑91 (MQ=255)

                                                                             ggCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAgc               >  1:3025766/1‑91 (MQ=255)

                                                                              gCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAgcg              >  2:2190666/1‑91 (MQ=255)

                                                                              gCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAgcg              >  1:933555/1‑91 (MQ=255)

                                                                               catcatCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAgcgc             <  1:1367864/91‑1 (MQ=255)

                                                                                 tcatcaGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCAt           <  2:1167185/91‑1 (MQ=255)

                                                                                   atcaGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTa         >  2:2404917/1‑91 (MQ=255)

                                                                                   atcaGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTa         >  1:3047384/1‑91 (MQ=255)

                                                                                      aggtATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCt      >  2:682343‑M2/5‑91 (MQ=255)

                                                                                        gtATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCa                                         <  1:807447‑M2/52‑1 (MQ=255)

                                                                                        gtATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCa                                         >  2:807447‑M2/3‑54 (MQ=255)

                                                                                        gtATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCTAc    <  1:477421‑M2/89‑1 (MQ=255)

                                                                                         tATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCTACa   >  1:2325928‑M2/2‑91 (MQ=255)

                                                                                         tATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCTACa   <  2:1982943‑M2/90‑1 (MQ=255)

                                                                                         tATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCTACa   >  1:1828271‑M2/2‑91 (MQ=255)

                                                                                          attattTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCTACAg  <  2:813281/91‑1 (MQ=255)

                                                                                          attattTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCTACAg  <  1:1510229/91‑1 (MQ=255)

GGGAAAGCTAATACATTATTAATTTGGTTAGGATAGTCTGAACGTCCTGTACCAACAACTCGTGCACCTGCCGCTTTGGCATCATCAGGTATTATTTCAGGATTTGGATTAGCCATTGCAAATATAATTGGATTATCTGCCATACTCTTAACCATATCTTGTGACAGCGCATTAGCTACAG  >  USA300TCH1516_ALE/1810630‑1810810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.