| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1868943 | 170 (0.890) | 17 (0.100) | 10/142 | NT | 10.0% | intergenic (‑350/+120) | ytnP/trmB | putative quorum‑quenching lactonase YtnP/tRNA (guanine‑N(7)‑)‑methyltransferase |
| ? | USA300TCH1516_ALE | = 1868972 | 156 (0.920) | intergenic (‑379/+91) | ytnP/trmB | putative quorum‑quenching lactonase YtnP/tRNA (guanine‑N(7)‑)‑methyltransferase | |||||
TTGTTCATAGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1868845‑1868943‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatcggacTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATTAAAAGTGACT < USA300TCH1516_ALE/1868972‑1868883 TTGTTCATAGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAA < 2:1244496/91‑1TTGTTCATAGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAA > 1:247691/1‑91TTGTTCATAGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAA > 1:248023/1‑91 TGTTCATAGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAA > 2:314651/1‑91 TGTTCATAGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAA > 2:3142337/1‑91 GTTCATAGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAA > 2:1805749/1‑91 TTCATAGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATAAAAAAAAAAAAAAAAT < 2:1965414/91‑1 TCATAGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATAATAGAGATACTTGCGCTGTTTTTATATTGAAAATCAAAAAATC > 1:3795222/1‑91 CATAGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCG > 2:2152527/1‑91 ATAGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGG < 1:2993933/91‑1 ATAGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGG > 2:2845330/1‑91 ATAGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGG < 1:2993851/91‑1 ATAGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGG > 2:212071/1‑91 ATAGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGG > 2:211990/1‑91 ATAGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGG > 2:1971669/1‑91 TAGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGA > 2:37551/1‑91 AGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGAC > 1:74965/1‑91 AGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGAC > 1:74946/1‑91 CATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACTGATG > 1:3629941/1‑91 TTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACTGATGGA < 1:2798686/91‑1 TTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGGAAAAAGTTTT < 2:2629272/91‑1 GTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCA < 2:2332204/91‑1 AGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTG < 2:194181/91‑1 GTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCATAATCAAAAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGT < 2:3096730/91‑1 GTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGT < 2:2103375/91‑1 GTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGT < 2:425736/91‑1 TCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTC < 1:1394476/91‑1 TCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTC < 1:336664/91‑1 TCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTC < 1:336237/91‑1 TTTTAATTCTAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGAT < 2:3363837/91‑1 TTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGAT < 1:615455/91‑1 TTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATT < 1:1529282/91‑1 TTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATT < 1:135295/91‑1 TTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATT < 2:3629941/91‑1 TTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTT < 2:1173544/91‑1 TTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTG < 1:2039752/91‑1 ATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATTAAAA < 1:2407696/91‑1 TCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATTAAAAG > 2:3316845/1‑91 TCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATTAAAAG < 1:1271645/91‑1 TCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATTAAAAG < 2:1322340/91‑1 TCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATTAAAAG > 1:2985217/1‑91 TCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATTAAAAG < 1:1141030/91‑1 TCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATTAAAAG < 1:3385388/91‑1 CGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATTAAAAGT > 1:2847110/1‑91 CGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATTAAAAGT > 1:1782194/1‑91 CGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATTAAAAGT > 1:140606/1‑91 GGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATTAAAAGTG > 2:1884325/1‑91 GACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATTAAAAGTGA < 1:2460473/91‑1 GACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATTAAAAGTGA > 1:2157115/1‑91 GACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATTAAAAGTGA < 1:2643396/91‑1 ACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTTTATATAAAAAAAGCGCAATTATCTCTATAATTAAAAGTGAC > 2:3345581/1‑91 ACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATTAAAAGTGAC < 1:1085974/91‑1 ACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATTAAAAGTGAC > 1:1629728/1‑91 ACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATTAAAAGTGAC < 1:3681720/91‑1 CTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATTAAAAGTGACT > 1:2477207/1‑91 CTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATTAAAAGTGACT > 1:3266658/1‑91 TTGTTCATAGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1868845‑1868943‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatcggacTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATTAAAAGTGACT < USA300TCH1516_ALE/1868972‑1868883 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |