New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1868943170 (0.890)17 (0.100) 10/142 NT 10.0% intergenic (‑350/+120) ytnP/trmB putative quorum‑quenching lactonase YtnP/tRNA (guanine‑N(7)‑)‑methyltransferase
?USA300TCH1516_ALE = 1868972 156 (0.920)intergenic (‑379/+91) ytnP/trmB putative quorum‑quenching lactonase YtnP/tRNA (guanine‑N(7)‑)‑methyltransferase

Only 100 of 310 total aligned reads displayed.

AGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGA  >  USA300TCH1516_ALE/1868853‑1869033
                                                                                          |                                                                                          
gagcacttatgagggtatgtacacatacaatcataagtgttttttcgtactataatggttctatagataaaggttctataatAAATCGGAc                                                                                            <  1:314651‑M1/9‑1 (MQ=255)
  gcacttatgagggtatgtacacatacaatcataagtgttttttcgtactataatggttctatagataaaggttctataatAAATCGGACAg                                                                                          <  2:1030305‑M1/11‑1 (MQ=255)
  gcacttatgagggtatgtacacatacaatcataagtgttttttcgtactataatggttctatagataaaggttctataatAAATCGGACAg                                                                                          <  2:3589371‑M1/11‑1 (MQ=255)
   cgcATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGa                                                                                         >  1:986752/1‑91 (MQ=255)
       ttATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACtgatgga                                                                                     <  1:2798686‑M1/91‑8 (MQ=255)
       ttATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGaa                                                                                     >  2:1119449/1‑91 (MQ=255)
       ttATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGaa                                                                                     >  2:3103704/1‑91 (MQ=255)
       ttATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGaa                                                                                     >  1:1452449/1‑91 (MQ=255)
        tATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGaaa                                                                                    >  1:2346978/1‑91 (MQ=255)
          tctcCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAg                                                                                  <  2:1779406/91‑1 (MQ=255)
           ctcCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGt                                                                                 >  1:1114826/1‑91 (MQ=255)
           ctcCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGt                                                                                 >  1:1949908/1‑91 (MQ=255)
             ccTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTa                                                                               <  1:1173473/91‑1 (MQ=255)
              cTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTaa                                                                              <  2:2919550/91‑1 (MQ=255)
              cTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTaa                                                                              <  1:3391982/91‑1 (MQ=255)
              cTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTaa                                                                              >  1:100842/1‑91 (MQ=255)
               tttAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTaaa                                                                             <  2:3866424/91‑1 (MQ=255)
               tttAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTaaa                                                                             <  2:918365/91‑1 (MQ=255)
               tatgtacacatacaatcataagtgttttttcgtactataatggttctatagataaaggttctataatAAATCGGACAGATGAAAAGTTaaa                                                                             <  2:2596281‑M1/24‑1 (MQ=255)
                  aGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAAc                                                                          <  1:1633568/91‑1 (MQ=255)
                     tATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACttt                                                                       >  2:191991/1‑91 (MQ=255)
                      aTTTGTTTAGTCCCTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACtttt                                                                      >  1:2967014/1‑91 (MQ=255)
                      aTTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACtttt                                                                      >  2:1465055/1‑91 (MQ=255)
                       catacaatcataagtgttttttcgtactataatggttctatagataaaggttctataatAAATCGGACAGATGAAAAGTTAAAAACttttt                                                                     >  1:3589371‑M1/60‑91 (MQ=255)
                          acaatcataagtgttttttcgtactataatggttctatagataaaggttctataatAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCa                                                                  >  1:1031563‑M1/57‑91 (MQ=255)
                           caatcataagtgttttttcgtactataatggttctatagataaaggttctataatAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCAt                                                                 >  1:890968‑M1/56‑91 (MQ=255)
                           caatcataagtgttttttcgtactataatggttctatagataaaggttctataatAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCAt                                                                 >  1:3792883‑M1/56‑91 (MQ=255)
                            ttAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATc                                                                <  2:3441775/91‑1 (MQ=255)
                            ttAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATc                                                                >  2:1171428/1‑91 (MQ=255)
                            ttAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATc                                                                >  1:2521609/1‑91 (MQ=255)
                             tAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCa                                                               <  1:683141/91‑1 (MQ=255)
                              aGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACtgatggaaaaagtttttaacttttcatctg                                                              <  2:194181‑M1/91‑31 (MQ=255)
                              aGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAg                                                              >  1:3266658‑M2/1‑90 (MQ=255)
                               gTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAgt                                                             <  1:1085974‑M2/91‑3 (MQ=255)
                               gTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATAAAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAgt                                                             >  2:3345581‑M2/1‑89 (MQ=255)
                                tCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACtgatggaaaaagtttttaacttttcatctgtc                                                            <  1:336237‑M1/91‑33 (MQ=255)
                                tCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAgtc                                                            >  1:2157115‑M2/1‑88 (MQ=255)
                                tCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAgtc                                                            <  1:2460473‑M2/91‑4 (MQ=255)
                                 taagtgttttttcgtactataatggttctatagataaaggttctataatAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTcc                                                           >  1:2451573‑M1/50‑91 (MQ=255)
                                 taagtgttttttcggactataatggttctatagataaaggttctataatAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTcc                                                           >  1:1067844‑M1/50‑91 (MQ=255)
                                  aagtgttttttcgtactataatggttctatagataaaggttctataatAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCg                                                          >  1:2932184‑M1/49‑91 (MQ=255)
                                  aCTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAgtccg                                                          >  1:1782194‑M2/1‑86 (MQ=255)
                                   cTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAgtccga                                                         <  2:1322340‑M2/91‑7 (MQ=255)
                                   cTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAgtccga                                                         <  1:1141030‑M2/91‑7 (MQ=255)
                                    gtgttttttcggactataatggttctatagataaaggttctataatAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGAt                                                        >  1:3513903‑M1/47‑91 (MQ=255)
                                     tttAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACtgatggaaaaagtttttaacttttcatctgtccgatt                                                       <  1:1529282‑M1/91‑38 (MQ=255)
                                        aaTTATAGAGATAATTGCGCTTTTTTTTTTTTCAAAATTAAAAAATCGGACAGATTGAAAGTTAAAAACTTTTTCCATTAGTTCGGTttat                                                    >  2:1976750/1‑91 (MQ=21)
                                        aaTTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATttat                                                    >  1:136352/1‑91 (MQ=255)
                                          ttATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACtgatggaaaaagtttttaacttttcatctgtccgattttttg                                                  <  1:2039752‑M1/91‑43 (MQ=255)
                                           tataGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTtattat                                                 >  1:3535629/1‑91 (MQ=255)
                                           tataGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAAGCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTtattat                                                 <  2:539475/91‑1 (MQ=255)
                                             taGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCGGATTTATTATAg                                               <  1:2988901/91‑1 (MQ=255)
                                             taGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAg                                               >  2:2210116/1‑91 (MQ=255)
                                             taGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAg                                               >  2:2166042/1‑91 (MQ=255)
                                             taGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAg                                               >  2:2954804/1‑91 (MQ=255)
                                             taGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAg                                               <  2:458735/91‑1 (MQ=255)
                                                  aTAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCt                                          >  1:1811232/1‑91 (MQ=255)
                                                       tGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATc                                     >  2:1297487/1‑91 (MQ=255)
                                                        gcgcTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCt                                    >  1:526272/1‑91 (MQ=255)
                                                        gcgcTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCt                                    >  1:759919/1‑91 (MQ=255)
                                                         cgcTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCta                                   >  2:3724533/1‑91 (MQ=255)
                                                          gcTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCtat                                  <  2:2346978/91‑1 (MQ=255)
                                                          gcTTTTTTCATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCGGTCCGATTTATTATAGAACCTTTATCtat                                  <  2:3372810/91‑1 (MQ=255)
                                                           cTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCtata                                 <  2:2530795/91‑1 (MQ=255)
                                                              tttttATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGaa                              >  1:1577748/1‑91 (MQ=255)
                                                               ttttATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAAc                             <  1:515207/91‑1 (MQ=255)
                                                                 ttATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCa                           <  2:3435052/91‑1 (MQ=255)
                                                                  tataTTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCAt                          >  2:382910/1‑91 (MQ=255)
                                                                     atTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATtat                       >  1:2851906/1‑91 (MQ=255)
                                                                         aaaatcaaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTa                   >  1:2058451/1‑91 (MQ=255)
                                                                          aaatcaaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTAc                  <  2:1409587/91‑1 (MQ=255)
                                                                           aatcaaaaAATCGGACAGATGAAAAGTTAAAGACTTTTTCCATCGGTCCGATTCATTGTAGAACCTTTATCTATAGAACCATTATAGTACg                 <  1:3097804/91‑1 (MQ=25)
                                                                           aatcaaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACg                 >  1:2590063/1‑91 (MQ=255)
                                                                           aatcaaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACg                 >  2:3086246/1‑91 (MQ=255)
                                                                           aatcaaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACg                 <  1:3631654/91‑1 (MQ=255)
                                                                             tcaaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGaa               >  1:724605/1‑91 (MQ=255)
                                                                              caaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGa                                              >  2:1220318/1‑59 (MQ=255)
                                                                              caaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGa                                              <  1:1220318/59‑1 (MQ=255)
                                                                               aaaaaaTCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGaaaa             >  2:1261804/1‑91 (MQ=255)
                                                                                aaaaaTCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGaaaaa            <  1:1692734/91‑1 (MQ=255)
                                                                                   aaTCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAgtccgattttttgattttgaatataaaaaaagcgcaattatctctataattaaa         <  2:3629941‑M2/91‑55 (MQ=255)
                                                                                   AATCGGACATATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAaca         >  1:3724533‑M1/1‑91 (MQ=255)
                                                                                   AATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAaca         >  2:66052‑M1/1‑91 (MQ=255)
                                                                                    aTCGGACtgatggaaaaagtttttaacttttcatctgtccgattttttgattttgaatataaaaaaagcgcaattatctctataattaaaa        <  1:2407696‑M1/91‑85 (MQ=255)
                                                                                    ATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAacac        <  1:3861227‑M1/91‑1 (MQ=255)
                                                                                     tCGGACtgatggaaaaagtttttaacttttcatctgtccgattttttgattttgaatataaaaaaagcgcaattatctctataattaaaag       >  2:3316845‑M1/1‑6 (MQ=255)
                                                                                     tCGGACtgatggaaaaagtttttaacttttcatctgtccgattttttgattttgaatataaaaaaagcgcaattatctctataattaaaag       <  1:1271645‑M1/91‑86 (MQ=255)
                                                                                     TCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACt       >  1:794618‑M1/1‑91 (MQ=255)
                                                                                      cGGACtgatggaaaaagtttttaacttttcatctgtccgattttttgattttgaatataaaaaaagcgcaattatctctataattaaaagt      >  1:140606‑M1/1‑5 (MQ=255)
                                                                                      CGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACtt      <  2:3173551‑M1/91‑1 (MQ=255)
                                                                                       ggACtgatggaaaaagtttttaacttttcatctgtccgattttttgattttgaatataaaaaaagcgcaattatctctataattaaaagtg     >  2:1884325‑M1/1‑4 (MQ=255)
                                                                                        gACAGATGAAAAGTTAAAAACTTTTTCCATCAgtccgattttttgattttgaatataaaaaaagcgcaattatctctataattaaaagtga    <  1:336664‑M2/91‑60 (MQ=255)
                                                                                         aCtgatggaaaaagtttttaacttttcatctgtccgattttttgattttgaatataaaaaaagcgcaattatctctataattaaaagtgac   >  1:1629728‑M1/1‑2 (MQ=255)
                                                                                         aCAGATGAAAAGTTAAAAACTTTTTCCATCAgtccgattttttgattttgaatataaaaaaagcgcaattatctctataattaaaagtgac   <  2:2103375‑M2/91‑61 (MQ=255)
                                                                                         ACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACt       <  2:1177138‑M1/87‑1 (MQ=255)
                                                                                         ACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATg   <  1:1329849‑M1/91‑1 (MQ=255)
                                                                                         ACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATg   <  1:2135810‑M1/91‑1 (MQ=255)
                                                                                         ACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATg   <  1:2646478‑M1/91‑1 (MQ=255)
                                                                                         ACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATg   <  1:2640230‑M1/91‑1 (MQ=255)
                                                                                          CAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGa  >  2:3517089‑M1/1‑91 (MQ=255)
                                                                                          |                                                                                          
AGGCGCATTATCTCCTTTAGTTATTTGTTTAGTCACTTTTAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGA  >  USA300TCH1516_ALE/1868853‑1869033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.