| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1908173 = | 190 (1.000) | 26 (0.150) | 24/148 | NT | 13.7% | intergenic (+392/+48) | USA300HOU_RS09450/tal | hypothetical protein/Transaldolase |
| ? | USA300TCH1516_ALE | 1908206 = | 152 (0.860) | intergenic (+425/+15) | USA300HOU_RS09450/tal | hypothetical protein/Transaldolase | |||||
AAAGGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1908268‑1908173‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtttAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTAAT > USA300TCH1516_ALE/1908206‑1908295 AAAGGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGG < 1:670521/91‑1AAAGGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGG < 1:1533928/91‑1AAAGGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGG < 1:757887/91‑1AAAGGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGG < 1:671122/91‑1 AAGGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGG < 1:3735941/91‑1 AAGGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGG > 2:2933590/1‑91 AAGGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGG < 2:3249527/91‑1 AAGGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGG > 1:1770039/1‑91 AAGGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGG > 1:2100345/1‑91 AAGGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGG > 1:2180777/1‑91 AGGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAGTATATTTAAACCCTCATAGGCATTGTGCTTATGGGGG < 2:1539653/91‑1 GGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGT > 2:2541276/1‑91 GGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGT > 1:556048/1‑91 GGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGT < 2:2941437/91‑1 GGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATACTTAAACCCTCATAGGCATTGTGCTTATGGGGGT > 2:585074/1‑91 GCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATGAATATATTTAAACCCCCATAAGCACAATGCCTATGAGGGTT < 2:1508135/91‑1 GCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGTT < 1:3478771/91‑1 CTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGTTT > 2:2257996/1‑91 CTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGTTT > 1:1418178/1‑91 CTTTGCGAAAGATATTCAATCTTCAGGTCCTTCTAATCTATAATATAGAAAAATATCTAAACCCTCATAGGCATTGAGCTTATGGGGcgat > 2:805351/1‑87 GCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAAT < 1:994618/91‑1 CGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATA < 1:2246048/91‑1 GATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTT < 2:535192/91‑1 TCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATA < 2:799347/91‑1 CAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATAT < 2:381523/91‑1 CTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATA < 2:521040/91‑1 aAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAA < 2:3855907/90‑1 GGTCTTTCTATTCTATAATATATAAATATATTTAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATA < 2:78279/91‑1 TCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGA > 1:753066/1‑91 CTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAA > 1:3801720/1‑91 TAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGAT > 1:654796/1‑91 TATATAAATATATTTAAACCCTCATAGGCATTGTGCTTTTGGGGTTTTAAATATCCTTATATATTATAGAATAGAAAGCCCTGAAGAATGA > 2:2753575/1‑91 ATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAA > 1:2182333/1‑91 TAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATAT > 1:1449855/1‑91 TAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATAT > 1:1449656/1‑91 ATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTC > 1:1713940/1‑91 TATTTAAACCCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCG > 1:2245954/1‑91 TTAAACCCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAA > 2:3536867/1‑91 TTAAACCCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAA > 2:3883760/1‑91 CTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTT < 2:1713940/91‑1 CTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTT > 1:1774127/1‑91 TCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTA > 1:291506/1‑91 ATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAAC > 2:938132/1‑91 AGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTG > 1:1252025/1‑91 GGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGT > 2:2244800/1‑91 GCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTA > 2:2390626/1‑91 CATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTAT > 1:1176030/1‑91 CATTGTGCTAATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTAT > 1:1176127/1‑91 GGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAGTTCG > 1:3234069/1‑91 GGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCG < 1:1390728/91‑1 GGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCG < 2:2264923/91‑1 GGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGT < 2:1251880/91‑1 GTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTT < 1:3819688/91‑1 GTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTT < 2:496148/91‑1 GTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTT < 1:2487993/91‑1 GTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTT > 1:2414945/1‑91 TTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTA > 2:191508/1‑91 TTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTAA < 1:692550/91‑1 TTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTAA < 1:2661160/91‑1 TTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTAA < 2:2620515/91‑1 TAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTAAT < 2:1329042/91‑1 AAAGGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1908268‑1908173‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtttAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTAAT > USA300TCH1516_ALE/1908206‑1908295 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |