| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1908173 = | 190 (1.000) | 26 (0.150) | 24/148 | NT | 13.7% | intergenic (+392/+48) | USA300HOU_RS09450/tal | hypothetical protein/Transaldolase |
| ? | USA300TCH1516_ALE | 1908206 = | 152 (0.860) | intergenic (+425/+15) | USA300HOU_RS09450/tal | hypothetical protein/Transaldolase | |||||
Only 100 of 257 total aligned reads displayed.
ACTCCTGTTGAATCAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAG > USA300TCH1516_ALE/1908083‑1908263 | attaacgaattatcagtagatacagttaaaggctttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatattta < 2:1329042‑M1/1‑1 (MQ=255)aCTCCTGTTGAATCAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGaaa < 1:716263/91‑1 (MQ=255) cTCCTGTTGAATCAATTTAGACTTTTTTATTACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGaaaa > 2:3416529/1‑91 (MQ=255) taacgaattatcagtagatacagttaaaggctttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttaaa > 2:191508‑M1/89‑91 (MQ=255) aacgaattatcagtagatacagttaaaggctttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttAAAc < 1:2487993‑M1/4‑1 (MQ=255) aacgaattatcagtagatacagttaaaggctttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttAAAc < 1:3819688‑M1/4‑1 (MQ=255) cTGTTGAATCAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGTATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAAcc < 1:3359825/91‑1 (MQ=255) cTGTTGAATCAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAAcc < 2:941449/91‑1 (MQ=255) cTGTTGAATCAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAAcc < 1:998950/91‑1 (MQ=255) cgaactatcagtagatacagttaaaggctttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttAAAccc > 1:3234069‑M1/86‑91 (MQ=255) tGAATCAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCa > 2:2853916/1‑91 (MQ=255) tGAATCAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCa > 2:1281657/1‑91 (MQ=255) gAATCAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCAt < 2:799411/91‑1 (MQ=255) aaTCAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATa < 2:3020265/91‑1 (MQ=255) aTCAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATaa > 1:2933590/1‑91 (MQ=255) cAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCTCATaggc < 1:448561/91‑4 (MQ=255) cAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGc > 2:1248962/1‑91 (MQ=255) cAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGc < 1:475242/91‑1 (MQ=255) cAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGc > 2:692550/1‑91 (MQ=255) ttAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACaa > 2:881955/1‑91 (MQ=255) ttAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACaa > 2:2014890/1‑91 (MQ=255) atacagttaaaggctttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttAAACCCCCATTAGCACAATg > 1:1176127‑M1/72‑91 (MQ=255) aGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAAtc > 2:2385618/1‑90 (MQ=255) aGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATg < 1:1107148/91‑1 (MQ=255) acagttaaaggctttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttAAACCCCCATAAGCACAATGcc > 2:2244800‑M1/70‑91 (MQ=255) aCTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGcc > 1:2344228/1‑91 (MQ=255) ttttttATAGCTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTa < 1:3715408/91‑1 (MQ=255) ttttttATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTa < 2:3212268/91‑1 (MQ=255) ttttttATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTa < 2:328674/91‑1 (MQ=255) tttttATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTAt > 2:3250216/1‑91 (MQ=255) ttttATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATg < 1:933192/91‑1 (MQ=255) ttttATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATg < 1:932231/91‑1 (MQ=255) ttttATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATg < 1:126744/91‑1 (MQ=255) tttATAACTCTAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGa < 2:3542261/91‑1 (MQ=255) ttATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAg < 1:1430721/91‑1 (MQ=255) ttATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAg < 2:1860704/91‑1 (MQ=255) aaaggctttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttAAACCCCCATAAGCACAATGCCTATGAg < 2:1713940‑M1/28‑1 (MQ=255) ataACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAggg > 2:1418178/1‑91 (MQ=255) ttcTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGtt > 2:2319161/3‑91 (MQ=255) aaCTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGtt > 2:1490785/1‑91 (MQ=255) aCTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGttt < 2:3210159/91‑1 (MQ=255) aCTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGttt > 2:2606690/1‑91 (MQ=255) cTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTa < 1:2353676/91‑1 (MQ=255) ttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttAAACCCCCATAAGCACAATGCCTATGAGGGTTTaa > 2:3883760‑M1/57‑91 (MQ=255) cGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTaaa > 1:2846215/1‑91 (MQ=255) gAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAat < 2:44289/91‑1 (MQ=255) cgaaagatattcaatcttcaggtctttctattctataatatataaatatatttAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAata > 1:2245954‑M1/54‑91 (MQ=255) aGCTTTTACTTGGCTGAATTTTGTCTTCTTCTTCATTAATAAATATGATGGAAAAACCCTCATAAGCACAATGCCTATGAGGGTTTAAata < 2:2968877/91‑1 (MQ=255) aGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAata < 1:3201758/91‑1 (MQ=255) gCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAatat > 1:1710813/1‑91 (MQ=255) ttttACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAatatat < 2:3460884/91‑1 (MQ=255) tttACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATAtt > 1:1980557/1‑91 (MQ=255) tttACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATAtt > 2:3673161/1‑91 (MQ=255) tttACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAAAATAtt > 2:3576108/1‑91 (MQ=255) ttACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAg > 1:1763712/1‑76 (MQ=255) ttACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATAttt > 2:2487993/1‑91 (MQ=255) tACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAGCCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTta < 2:1232580/91‑1 (MQ=255) tACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTta > 2:2406689/1‑91 (MQ=255) cTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTtata > 1:360404/1‑91 (MQ=255) tcattcttcagggctttctattctataatatataaggatatttAAAACCCCAAAAGCACAATGCCTATGAGGGTTTAAATATATTtatata > 2:2753575‑M1/44‑91 (MQ=255) tAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTtatata < 2:873766/91‑1 (MQ=255) aGCTGAATTTTGACTTCTTCTTCATTAATAAATATGATGGAAAAACGCCCATAAGCGCAATGCCTATGAGGGTGTAAATATATTTatatat < 2:2559504/91‑1 (MQ=255) atcttcaggtctttctattctataatatataaatatatttAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATAtatta > 1:654796‑M1/41‑91 (MQ=255) gAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATtata < 1:3139901/91‑1 (MQ=255) aaTTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTatag > 1:999713/1‑91 (MQ=255) aaTTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTatag > 1:1300005/1‑91 (MQ=255) ttttGGCTTCTTCTTCATTAATAACTATGGTGGAAAAACCCCCATGAGCACAATGACTATGAGGGTTTAAATATATTTATATATTagagaa < 2:895308/91‑1 (MQ=255) tctttctattctataatatataaatatatttAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTatagaataga > 1:753066‑M1/32‑91 (MQ=255) gACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTatagaataga < 1:1608253/91‑1 (MQ=255) cttcttcttCATTCATAACTATGATGGAAAAATCCTTATAAGTACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGaaa > 2:2802246/1‑91 (MQ=255) cttcttcttCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGaaa > 1:1867285/1‑91 (MQ=255) ttcttcttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAg < 1:1138185/91‑1 (MQ=255) tcttcttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGa > 1:2257996/1‑91 (MQ=255) gcttcttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGa < 2:3843139/90‑1 (MQ=255) ctttttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGAc < 1:3498561/91‑1 (MQ=255) cttcttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGAc < 2:1146196/91‑1 (MQ=255) ttcttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGAcc < 1:1248962/91‑1 (MQ=255) tattctataatatataaatatatttAAACCCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGAcc < 2:78279‑M1/66‑1 (MQ=255) cttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTg > 2:3127158/1‑91 (MQ=255) ttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATAATAGAATAGAAAGACCTGa > 2:1367708/1‑91 (MQ=255) tataatatataaatatatttAAACCCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAg < 2:521040‑M1/71‑1 (MQ=255) cATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAg > 1:2610005/1‑91 (MQ=255) taataaCTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTatagaatag > 1:216058/1‑76 (MQ=255) atatataaatatatttAAACCCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTg < 2:381523‑M1/75‑1 (MQ=255) ataaCTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGa > 1:1660887/1‑91 (MQ=255) ataaCTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGa > 1:1774996/1‑91 (MQ=255) taaCTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGaa < 1:1058492/91‑1 (MQ=255) aaCTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAat > 2:3873096/1‑91 (MQ=255) cTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAatat > 1:2128800/1‑91 (MQ=255) aaatatatttAAACCCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATc < 2:535192‑M1/81‑1 (MQ=255) tgatgGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCtt < 1:2559774/91‑1 (MQ=255) gatgGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCttt > 1:1546072/1‑91 (MQ=255) atgGAAGAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTc > 1:3017021/1‑91 (MQ=255) tgGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCg < 2:1650730/91‑1 (MQ=255) tgGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCg > 1:2704832/1‑91 (MQ=255) ggAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGc < 1:2288622/91‑1 (MQ=255) aaaaaCCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCaa < 1:1343178/91‑1 (MQ=255) aaaaaCCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCaa < 2:2110505/91‑1 (MQ=255) aaaaaCCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCaa > 1:203141/1‑91 (MQ=255) aaaaCCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCaaa > 1:2460296/1‑91 (MQ=255) | ACTCCTGTTGAATCAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAG > USA300TCH1516_ALE/1908083‑1908263 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |