| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1939372 | 197 (1.030) | 15 (0.080) | 9/154 | NT | 7.5% | intergenic (‑231/+132) | hsdM_2/splF | Type I restriction enzyme EcoKI M protein/Serine protease SplF |
| ? | USA300TCH1516_ALE | = 1939415 | 178 (0.970) | intergenic (‑274/+89) | hsdM_2/splF | Type I restriction enzyme EcoKI M protein/Serine protease SplF | |||||
AAATTTTATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1939280‑1939372‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaGCCAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATATA < USA300TCH1516_ALE/1939415‑1939326 AAATTTTATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATA > 1:3750211/1‑91 AATTTTATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAA > 2:1498114/1‑91 AATTTTATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAA > 1:807342/1‑91 tTTTTATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAA < 1:221833/90‑1 ATTTTATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAA < 2:3080993/91‑1 ATTTTATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAA < 2:2869879/91‑1 ATTTTATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAA < 2:3081358/91‑1 ATTTTATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAA < 1:46997/91‑1 GCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAGCCAATCAACGATTGATTTTCACCAACTC < 1:622096/91‑1 GCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAGCCAATCAACGATTGATTTTCACCAACTC < 1:624291/91‑1 CAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACGATTGATTTTCACCAACTCAATTG < 1:2627350/91‑1 CAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACGATTGATTTTCACCAACTCAATTG < 1:2627136/91‑1 TCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACGATTGATTTTCACCAACTCAATTGTTGAT < 1:2921711/91‑1 TCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACGATTGATTTTCACCAACTCAATTGTTGAT < 1:2921548/91‑1 TCATTTATATTCTTAATGAAATCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACGATTGATTTTCACCAACTCAATTGTTGAT < 2:980369/91‑1 TATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAACCAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTT < 2:1008773/91‑1 ATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAGCCAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTA < 1:3574319/91‑1 ATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAGCCAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTA < 1:3574255/91‑1 TTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAAGCCAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTA < 1:917927/91‑1 TGATGTCAAAAAGTTGTTCATTCATACATAAATAAAGCCAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTA < 1:3808066/91‑1 TGATGTCAAAAAGTTGTTCATTCATACATAAATAAAGCCAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTA < 1:3808230/91‑1 ATGTCAAAAAGTTGTTCATTCATACATAAATAAAGCCAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATG < 1:3284618/91‑1 TGTCAAAAAGTTGTTCATTCATACATAAATAAAGCCAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGA < 1:3822756/91‑1 AAAGCCAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATA > 1:2522146/1‑91 AAAGCCAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATA < 2:2974747/91‑1 AAGCCAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATAT > 1:530393/1‑91 AGCCAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATATA < 1:617425/91‑1 AGCCAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATATA < 2:3839264/91‑1 AAATTTTATAGAAATGTTGTAGCTTTCAAATGCTTTCAAAATCATTTATATTCTTAATGATGTCAAAAAGTTGTTCATTCATACATAAATAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1939280‑1939372‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaGCCAATCAACGATTGATTTTCACCAACTCAATTGTTGATTGGTTTTATTTATGTATGAATGAACAACTTTTTGACATCATTAAGAATATA < USA300TCH1516_ALE/1939415‑1939326 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |